Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAH39_RS10280 Genome accession   NZ_CP132719
Coordinates   2245084..2245551 (-) Length   155 a.a.
NCBI ID   WP_306590008.1    Uniprot ID   -
Organism   Geothrix sp. 21YS21S-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2240084..2250551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAH39_RS10265 - 2240390..2242003 (-) 1614 WP_306590005.1 ATP-binding cassette domain-containing protein -
  RAH39_RS10270 - 2242156..2242542 (+) 387 WP_306590006.1 BlaI/MecI/CopY family transcriptional regulator -
  RAH39_RS10275 - 2242539..2244704 (+) 2166 WP_306590007.1 M56 family metallopeptidase -
  RAH39_RS10280 ssb 2245084..2245551 (-) 468 WP_306590008.1 single-stranded DNA-binding protein Machinery gene
  RAH39_RS10285 - 2245655..2246377 (+) 723 WP_306590009.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  RAH39_RS10290 - 2246393..2247181 (+) 789 WP_306590010.1 enoyl-CoA hydratase/isomerase family protein -
  RAH39_RS10295 - 2247314..2247616 (-) 303 WP_306590011.1 hypothetical protein -
  RAH39_RS10300 - 2247616..2248584 (-) 969 WP_306590012.1 transketolase family protein -
  RAH39_RS10305 - 2248673..2249584 (+) 912 WP_306590013.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16817.66 Da        Isoelectric Point: 6.4716

>NTDB_id=870369 RAH39_RS10280 WP_306590008.1 2245084..2245551(-) (ssb) [Geothrix sp. 21YS21S-4]
MSGSLNKVLLIGNLGRDPELKATPSGQSVARFSVATTETWKNPQGEKQSKTEWHNIVVWGKQAEIAEKYLRKGKQVMIEG
RIQYREYTDQAGVKKTACDIRCDNFVMLGRMEDGGGSRDSSGYGSRGGSQDFEDHGAPSPAGSGGGSFPDDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=870369 RAH39_RS10280 WP_306590008.1 2245084..2245551(-) (ssb) [Geothrix sp. 21YS21S-4]
ATGTCCGGATCCTTGAACAAAGTCCTGCTCATCGGAAACCTCGGGCGCGACCCCGAGCTGAAGGCCACGCCTTCGGGCCA
GAGCGTCGCCCGCTTCTCCGTCGCCACCACGGAGACCTGGAAGAATCCCCAGGGCGAGAAGCAGAGCAAGACCGAGTGGC
ACAACATCGTGGTGTGGGGCAAGCAGGCCGAGATCGCCGAGAAGTACCTGCGCAAGGGCAAGCAGGTGATGATCGAGGGC
CGCATCCAGTACCGCGAGTACACCGACCAGGCCGGCGTCAAGAAGACCGCCTGCGACATCCGCTGCGACAACTTCGTCAT
GCTGGGCCGCATGGAAGACGGCGGCGGCAGCCGGGACAGCAGCGGCTACGGCAGCCGCGGCGGTTCCCAGGACTTCGAGG
ATCACGGCGCCCCCAGCCCGGCGGGCAGCGGCGGCGGCAGCTTCCCGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

44.509

100

0.497
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.497
  ssb Vibrio cholerae strain A1552

44.8

80.645

0.361