Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RA177_RS16355 Genome accession   NZ_CP132599
Coordinates   3203192..3203848 (-) Length   218 a.a.
NCBI ID   WP_231506847.1    Uniprot ID   -
Organism   Bacillus safensis strain PL23A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3198192..3208848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS16320 (RA177_16335) fliW 3198329..3198763 (-) 435 WP_024423615.1 flagellar assembly protein FliW -
  RA177_RS16325 (RA177_16340) - 3198792..3199370 (-) 579 WP_024426253.1 DUF6470 family protein -
  RA177_RS16330 (RA177_16345) flgL 3199417..3200325 (-) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  RA177_RS16335 (RA177_16350) flgK 3200335..3201855 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  RA177_RS16340 (RA177_16355) - 3201871..3202353 (-) 483 WP_034623751.1 flagellar protein FlgN -
  RA177_RS16345 (RA177_16360) flgM 3202372..3202635 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  RA177_RS16350 (RA177_16365) - 3202715..3203134 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  RA177_RS16355 (RA177_16370) comFC 3203192..3203848 (-) 657 WP_231506847.1 ComF family protein Machinery gene
  RA177_RS16360 (RA177_16375) - 3203875..3204168 (-) 294 WP_024426256.1 late competence development ComFB family protein -
  RA177_RS16365 (RA177_16380) comFA 3204217..3205614 (-) 1398 WP_306655275.1 DEAD/DEAH box helicase Machinery gene
  RA177_RS16370 (RA177_16385) - 3205735..3206577 (-) 843 WP_024423625.1 DegV family protein -
  RA177_RS16375 (RA177_16390) degU 3206793..3207482 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  RA177_RS16380 (RA177_16395) degS 3207547..3208722 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24993.15 Da        Isoelectric Point: 10.0431

>NTDB_id=869611 RA177_RS16355 WP_231506847.1 3203192..3203848(-) (comFC) [Bacillus safensis strain PL23A]
MPAFTWKSFLLLNDDRLCVACKNHLVKIERPICPTCGRAQSNDQLCRDCNRWNERSDSIKILVKNRSVYTYNELMKDVLA
RFKFRGDTALAELFQKDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQSKKKKN
ERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=869611 RA177_RS16355 WP_231506847.1 3203192..3203848(-) (comFC) [Bacillus safensis strain PL23A]
GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGCCTTTGTGTAGCATGTAAGAATCACTTAGTAAA
GATTGAGCGTCCTATTTGTCCAACATGCGGAAGGGCGCAGTCAAATGACCAATTGTGCCGGGACTGTAACAGATGGAATG
AACGCTCTGATTCTATTAAAATCCTTGTAAAAAATAGGTCAGTTTATACTTACAACGAGTTGATGAAAGATGTCCTTGCC
CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTCAAAAAGATGTACAAGCAGCATTTAAACATTCCTTCTG
CATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTGATAA
TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT
GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGA
TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA
CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-49)

Phosphoribosyl transferase domain (Pribosyltran)

(127-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50

99.083

0.495