Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RA177_RS08345 Genome accession   NZ_CP132599
Coordinates   1683494..1684744 (+) Length   416 a.a.
NCBI ID   WP_024424112.1    Uniprot ID   -
Organism   Bacillus safensis strain PL23A     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1678494..1689744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS08320 (RA177_08330) ymfI 1679916..1680644 (+) 729 WP_073205228.1 elongation factor P 5-aminopentanone reductase -
  RA177_RS08325 (RA177_08335) - 1680718..1680975 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  RA177_RS08330 (RA177_08340) - 1681107..1681898 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  RA177_RS08335 (RA177_08345) - 1681922..1682821 (+) 900 WP_025092608.1 helix-turn-helix domain-containing protein -
  RA177_RS08340 (RA177_08350) pgsA 1682896..1683477 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RA177_RS08345 (RA177_08355) cinA 1683494..1684744 (+) 1251 WP_024424112.1 competence/damage-inducible protein A Machinery gene
  RA177_RS08350 (RA177_08360) recA 1684922..1685965 (+) 1044 WP_024424111.1 recombinase RecA Machinery gene
  RA177_RS08355 (RA177_08365) - 1686108..1687283 (+) 1176 WP_172881516.1 serine hydrolase -
  RA177_RS08360 (RA177_08370) rny 1687517..1689079 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45551.64 Da        Isoelectric Point: 4.7414

>NTDB_id=869587 RA177_RS08345 WP_024424112.1 1683494..1684744(+) (cinA) [Bacillus safensis strain PL23A]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=869587 RA177_RS08345 WP_024424112.1 1683494..1684744(+) (cinA) [Bacillus safensis strain PL23A]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGTACGCTTGGCAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCAATTCAAGACTACTT
TCTAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGAGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGCGAGGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCAGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.422

99.76

0.752
  cinA Streptococcus pneumoniae TIGR4

47.981

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394