Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RA177_RS07930 Genome accession   NZ_CP132599
Coordinates   1595727..1596506 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain PL23A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590727..1601506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS07910 (RA177_07920) trmFO 1591431..1592735 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RA177_RS07915 (RA177_07925) xerC 1592798..1593715 (+) 918 WP_103132420.1 tyrosine recombinase XerC -
  RA177_RS07920 (RA177_07930) hslV 1593730..1594275 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  RA177_RS07925 (RA177_07935) hslU 1594292..1595692 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  RA177_RS07930 (RA177_07940) codY 1595727..1596506 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RA177_RS07935 (RA177_07945) flgB 1596795..1597184 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  RA177_RS07940 (RA177_07950) flgC 1597184..1597636 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  RA177_RS07945 (RA177_07955) fliE 1597648..1597965 (+) 318 WP_024424178.1 flagellar hook-basal body complex protein FliE -
  RA177_RS07950 (RA177_07960) fliF 1598015..1599607 (+) 1593 WP_185854404.1 flagellar basal-body MS-ring/collar protein FliF -
  RA177_RS07955 (RA177_07965) fliG 1599619..1600635 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  RA177_RS07960 (RA177_07970) fliH 1600628..1601392 (+) 765 WP_056766434.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=869586 RA177_RS07930 WP_007499612.1 1595727..1596506(+) (codY) [Bacillus safensis strain PL23A]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=869586 RA177_RS07930 WP_007499612.1 1595727..1596506(+) (codY) [Bacillus safensis strain PL23A]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471