Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RAH45_RS00375 Genome accession   NZ_CP132595
Coordinates   86992..87891 (-) Length   299 a.a.
NCBI ID   WP_068407907.1    Uniprot ID   A0A2I0EQI2
Organism   Psychrobacter sp. van23A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 81992..92891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAH45_RS00355 (RAH45_00355) recN 82526..84205 (-) 1680 WP_068407916.1 DNA repair protein RecN -
  RAH45_RS00360 (RAH45_00360) - 84753..85088 (+) 336 WP_068407914.1 pyrimidine/purine nucleoside phosphorylase -
  RAH45_RS00365 (RAH45_00365) rlmB 85453..86223 (+) 771 WP_068407911.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RAH45_RS00370 (RAH45_00370) coaE 86186..86875 (-) 690 WP_068407908.1 dephospho-CoA kinase -
  RAH45_RS00375 (RAH45_00375) pilD 86992..87891 (-) 900 WP_068407907.1 A24 family peptidase Machinery gene
  RAH45_RS00380 (RAH45_00380) - 87917..89140 (-) 1224 Protein_75 type II secretion system F family protein -
  RAH45_RS00385 (RAH45_00385) pilB 89363..90997 (-) 1635 WP_068407905.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RAH45_RS00390 (RAH45_00390) tpiA 91462..92262 (+) 801 WP_082894377.1 triose-phosphate isomerase -
  RAH45_RS00395 (RAH45_00395) secG 92529..92837 (+) 309 WP_025652589.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32922.48 Da        Isoelectric Point: 7.9638

>NTDB_id=869530 RAH45_RS00375 WP_068407907.1 86992..87891(-) (pilD) [Psychrobacter sp. van23A]
MQFLQLLQENMTLALIIFGLLGLCVGSFLNVVIHRTPLMMLTAWRQECSQFMAEQADMPPEHTRPLSDIVAADTPITLST
PASRCPHCAHKIKWYENIPLISWLILRGRCSDCKAAIGLRYPIVELVTALLSMLVIYQFGVSAAGLSALILVWTLVALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQGWFVSPTQSIWGLLLGFLSLWVVVKIFYFITKKHGMGQGDFKLLAVLGAWLGPM
MLPLIILLSSLLGSIVGIILMKKQGESRPFAFGPYIAIAGIIALLYGPDIVNWYLGMYA

Nucleotide


Download         Length: 900 bp        

>NTDB_id=869530 RAH45_RS00375 WP_068407907.1 86992..87891(-) (pilD) [Psychrobacter sp. van23A]
ATGCAATTTCTTCAGTTATTACAAGAAAATATGACACTCGCTTTAATTATTTTTGGTCTACTTGGCCTCTGTGTCGGCAG
CTTTTTAAATGTGGTAATTCATCGGACACCGCTTATGATGTTAACGGCTTGGCGGCAAGAATGTAGCCAGTTTATGGCTG
AGCAAGCAGACATGCCACCTGAACATACGCGACCATTATCAGATATCGTCGCTGCTGATACTCCCATCACACTAAGCACA
CCTGCTTCACGCTGTCCGCACTGCGCCCATAAAATAAAGTGGTATGAAAACATCCCTTTAATAAGCTGGCTTATATTACG
CGGGCGCTGCTCAGACTGTAAAGCTGCTATCGGACTGCGTTATCCTATTGTTGAGCTGGTAACTGCTCTGCTATCTATGT
TGGTCATTTATCAGTTTGGCGTCAGCGCCGCAGGATTATCAGCATTGATTTTGGTCTGGACGCTGGTTGCTTTAACGGGT
ATCGATTTTGATACCCAGCTATTGCCTGACCGCCTGACCTTTCCTTTAGCGGGCTTAGGATTGGCGGTAAATTCGCAAGG
CTGGTTTGTCTCACCTACGCAGTCAATCTGGGGACTTTTACTTGGCTTTTTATCTTTGTGGGTCGTGGTAAAAATCTTTT
ATTTCATTACGAAAAAACACGGCATGGGACAAGGCGATTTTAAATTACTAGCCGTCTTGGGTGCTTGGCTTGGGCCTATG
ATGTTGCCACTCATTATCTTGCTCTCCTCCCTATTAGGTTCTATCGTCGGGATTATTCTGATGAAAAAACAAGGAGAAAG
TCGTCCTTTTGCTTTTGGTCCTTATATCGCCATTGCTGGTATCATTGCATTATTATACGGCCCAGATATCGTCAATTGGT
ATTTAGGAATGTACGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)

Type IV leader peptidase family (Peptidase_A24)

(149-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I0EQI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

55.903

96.321

0.538
  pilD Acinetobacter baumannii D1279779

54.167

96.321

0.522
  pilD Vibrio cholerae strain A1552

48.029

93.311

0.448
  pilD Vibrio campbellii strain DS40M4

45.118

99.331

0.448
  pilD Neisseria gonorrhoeae MS11

42.857

93.645

0.401