Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RA085_RS12500 Genome accession   NZ_CP132559
Coordinates   2517613..2518125 (-) Length   170 a.a.
NCBI ID   WP_002484307.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain SZ.YL11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2512613..2523125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA085_RS12455 (RA085_12450) - 2513621..2514376 (-) 756 WP_174544283.1 DUF536 domain-containing protein -
  RA085_RS12460 (RA085_12455) - 2514835..2514942 (+) 108 Protein_2412 replication protein -
  RA085_RS12465 (RA085_12460) - 2515284..2515436 (-) 153 WP_002484305.1 hypothetical protein -
  RA085_RS12470 (RA085_12465) - 2515499..2515771 (-) 273 WP_037539154.1 hypothetical protein -
  RA085_RS12475 (RA085_12470) - 2516195..2516410 (+) 216 WP_037539155.1 hypothetical protein -
  RA085_RS12480 (RA085_12475) - 2516592..2516798 (+) 207 WP_069826059.1 hypothetical protein -
  RA085_RS12485 (RA085_12480) - 2516823..2517044 (+) 222 WP_069822174.1 hypothetical protein -
  RA085_RS12490 (RA085_12485) - 2517059..2517199 (+) 141 WP_164971920.1 hypothetical protein -
  RA085_RS12495 (RA085_12490) rpsR 2517321..2517563 (-) 243 WP_002484306.1 30S ribosomal protein S18 -
  RA085_RS12500 (RA085_12495) ssbA 2517613..2518125 (-) 513 WP_002484307.1 single-stranded DNA-binding protein Machinery gene
  RA085_RS12505 (RA085_12500) rpsF 2518144..2518449 (-) 306 WP_069826058.1 30S ribosomal protein S6 -
  RA085_RS12510 (RA085_12505) - 2518871..2519677 (+) 807 WP_002484309.1 GH25 family lysozyme -
  RA085_RS12515 (RA085_12510) ychF 2519839..2520936 (-) 1098 WP_002484310.1 redox-regulated ATPase YchF -
  RA085_RS12520 (RA085_12515) - 2520936..2521151 (-) 216 WP_002484311.1 DUF951 domain-containing protein -
  RA085_RS12525 (RA085_12520) - 2521180..2522058 (-) 879 WP_037539157.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18948.48 Da        Isoelectric Point: 4.9163

>NTDB_id=869499 RA085_RS12500 WP_002484307.1 2517613..2518125(-) (ssbA) [Staphylococcus saprophyticus strain SZ.YL11]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=869499 RA085_RS12500 WP_002484307.1 2517613..2518125(-) (ssbA) [Staphylococcus saprophyticus strain SZ.YL11]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT
CATCTTATCAAAGTAATAACAACAATAACTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.953

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382