Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RA085_RS07855 Genome accession   NZ_CP132559
Coordinates   1601021..1601896 (-) Length   291 a.a.
NCBI ID   WP_069821932.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain SZ.YL11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1596021..1606896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA085_RS07840 (RA085_07845) xerC 1596278..1597168 (-) 891 WP_069838011.1 tyrosine recombinase XerC -
  RA085_RS07845 (RA085_07850) trmFO 1597287..1598594 (-) 1308 WP_002483472.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RA085_RS07850 (RA085_07855) topA 1598749..1600815 (-) 2067 WP_002483473.1 type I DNA topoisomerase -
  RA085_RS07855 (RA085_07860) dprA 1601021..1601896 (-) 876 WP_069821932.1 DNA-processing protein DprA Machinery gene
  RA085_RS07860 (RA085_07865) sucD 1602204..1603109 (-) 906 WP_002483475.1 succinate--CoA ligase subunit alpha -
  RA085_RS07865 (RA085_07870) sucC 1603131..1604297 (-) 1167 WP_002483476.1 ADP-forming succinate--CoA ligase subunit beta -
  RA085_RS07870 (RA085_07875) - 1604405..1605175 (-) 771 WP_041080446.1 ribonuclease HII -
  RA085_RS07875 (RA085_07880) ylqF 1605182..1606042 (-) 861 WP_037538552.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33744.43 Da        Isoelectric Point: 10.3610

>NTDB_id=869491 RA085_RS07855 WP_069821932.1 1601021..1601896(-) (dprA) [Staphylococcus saprophyticus strain SZ.YL11]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNFEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=869491 RA085_RS07855 WP_069821932.1 1601021..1601896(-) (dprA) [Staphylococcus saprophyticus strain SZ.YL11]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTTGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTTACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGCACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGTGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375