Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RAM44_RS12830 Genome accession   NZ_CP132397
Coordinates   2678720..2679226 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain CUVET18-164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2673720..2684226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM44_RS12800 (RAM44_12715) - 2674511..2674642 (-) 132 WP_015728521.1 hypothetical protein -
  RAM44_RS12805 (RAM44_12720) - 2674811..2676802 (+) 1992 WP_014614918.1 catalase -
  RAM44_RS12810 (RAM44_12725) - 2677061..2677234 (-) 174 WP_165487152.1 hypothetical protein -
  RAM44_RS12815 (RAM44_12730) - 2677452..2677694 (-) 243 WP_096548400.1 DUF3923 family protein -
  RAM44_RS12820 (RAM44_12735) - 2677855..2678385 (+) 531 Protein_2481 ABC transporter transmembrane domain-containing protein -
  RAM44_RS12825 (RAM44_12740) rpsR 2678424..2678666 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  RAM44_RS12830 (RAM44_12745) ssbA 2678720..2679226 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  RAM44_RS12835 (RAM44_12750) rpsF 2679249..2679545 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  RAM44_RS12840 (RAM44_12755) sbi 2679896..2681416 (+) 1521 WP_103263524.1 Ig-binding surface protein Sbi/SpsK -
  RAM44_RS12845 (RAM44_12760) - 2681470..2682279 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  RAM44_RS12850 (RAM44_12765) - 2682272..2683207 (-) 936 WP_096548398.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=869109 RAM44_RS12830 WP_014614920.1 2678720..2679226(-) (ssbA) [Staphylococcus pseudintermedius strain CUVET18-164]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=869109 RAM44_RS12830 WP_014614920.1 2678720..2679226(-) (ssbA) [Staphylococcus pseudintermedius strain CUVET18-164]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381