Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RAM42_RS12885 Genome accession   NZ_CP132389
Coordinates   2646757..2647263 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain CUVET16-793     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2641757..2652263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM42_RS12860 (RAM42_12775) - 2642263..2643090 (-) 828 WP_063278723.1 carbohydrate ABC transporter permease -
  RAM42_RS12865 (RAM42_12780) - 2643092..2643991 (-) 900 WP_063278722.1 carbohydrate ABC transporter permease -
  RAM42_RS12870 (RAM42_12785) - 2644001..2645326 (-) 1326 WP_096533760.1 ABC transporter substrate-binding protein -
  RAM42_RS12875 (RAM42_12790) - 2645430..2646260 (-) 831 WP_070407296.1 helix-turn-helix domain-containing protein -
  RAM42_RS12880 (RAM42_12795) rpsR 2646461..2646703 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  RAM42_RS12885 (RAM42_12800) ssbA 2646757..2647263 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  RAM42_RS12890 (RAM42_12805) rpsF 2647286..2647582 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  RAM42_RS12895 (RAM42_12810) sbi 2647919..2649445 (+) 1527 WP_015728518.1 Ig-binding surface protein Sbi/SpsK -
  RAM42_RS12900 (RAM42_12815) - 2649499..2650308 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  RAM42_RS12905 (RAM42_12820) - 2650301..2651254 (-) 954 WP_096533759.1 ABC transporter ATP-binding protein -
  RAM42_RS12910 (RAM42_12825) - 2651411..2651902 (-) 492 WP_096533323.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=868974 RAM42_RS12885 WP_014614920.1 2646757..2647263(-) (ssbA) [Staphylococcus pseudintermedius strain CUVET16-793]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=868974 RAM42_RS12885 WP_014614920.1 2646757..2647263(-) (ssbA) [Staphylococcus pseudintermedius strain CUVET16-793]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381