Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   RAM21_RS03410 Genome accession   NZ_CP132380
Coordinates   737455..737775 (+) Length   106 a.a.
NCBI ID   WP_086300939.1    Uniprot ID   A0A242NHD8
Organism   Gilliamella apicola strain ESL0178     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 732455..742775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM21_RS03400 (RAM21_03400) lon 732874..735309 (+) 2436 WP_086300943.1 endopeptidase La -
  RAM21_RS03405 (RAM21_03405) - 735442..737301 (+) 1860 WP_110455114.1 SurA N-terminal domain-containing protein -
  RAM21_RS03410 (RAM21_03410) comE1/comEA 737455..737775 (+) 321 WP_086300939.1 helix-hairpin-helix domain-containing protein Machinery gene
  RAM21_RS03415 (RAM21_03415) priA 737825..739993 (-) 2169 WP_086300937.1 primosomal protein N' -
  RAM21_RS03420 (RAM21_03420) moaC 740213..740704 (+) 492 WP_025316398.1 cyclic pyranopterin monophosphate synthase MoaC -
  RAM21_RS03425 (RAM21_03425) moaD 740697..740942 (+) 246 WP_084390328.1 molybdopterin synthase sulfur carrier subunit -
  RAM21_RS03430 (RAM21_03430) moaE 740947..741390 (+) 444 WP_110455113.1 molybdopterin synthase catalytic subunit MoaE -
  RAM21_RS03435 (RAM21_03435) - 741447..742145 (+) 699 WP_086300933.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11485.35 Da        Isoelectric Point: 7.7893

>NTDB_id=868865 RAM21_RS03410 WP_086300939.1 737455..737775(+) (comE1/comEA) [Gilliamella apicola strain ESL0178]
MKLFSILCILLSSITCSGLSFADSPPNEVTKNEVTQKEQQQIIQVNINTATAEELAKVLTGIGISKAKKIVEYREKFGSF
VSIEQLKEVSGIGQATLDKNVGKIAL

Nucleotide


Download         Length: 321 bp        

>NTDB_id=868865 RAM21_RS03410 WP_086300939.1 737455..737775(+) (comE1/comEA) [Gilliamella apicola strain ESL0178]
ATGAAACTATTTTCAATTTTATGTATTTTATTATCAAGTATCACTTGTTCCGGTTTAAGTTTTGCTGATAGCCCACCTAA
TGAAGTAACTAAAAATGAAGTAACTCAAAAGGAACAGCAACAAATTATACAAGTCAATATTAATACAGCTACAGCAGAAG
AGTTAGCTAAAGTATTAACAGGTATAGGGATAAGTAAAGCCAAAAAAATTGTTGAATATCGTGAAAAATTTGGGTCGTTT
GTTTCTATAGAACAATTGAAAGAAGTATCTGGTATTGGTCAAGCAACATTGGACAAAAATGTAGGTAAAATAGCTTTATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242NHD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

47.664

100

0.481
  comEA/comE1 Glaesserella parasuis strain SC1401

48

94.34

0.453
  comEA Vibrio campbellii strain DS40M4

40.566

100

0.406