Detailed information NTG0868782

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RAM00_RS02330
• Genome accession: NZ_CP132376
• Coordinates: 558696..559547 (-)
• Length: 283 a.a.
• NCBI ID: WP_078475025.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain K-FP26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 553696..564547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM00_RS02295 (RAM00_02290)	murA	553803..555062 (-)	1260	WP_084547387.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
RAM00_RS02300 (RAM00_02295)	-	555102..555350 (-)	249	WP_025329856.1	BolA family protein	-
RAM00_RS02305 (RAM00_02300)	-	555405..556166 (-)	762	WP_078475028.1	ABC transporter permease	-
RAM00_RS02310 (RAM00_02305)	-	556163..557083 (-)	921	WP_025329858.1	ABC transporter ATP-binding protein	-
RAM00_RS02315 (RAM00_02310)	yacG	557130..557327 (-)	198	WP_078475027.1	DNA gyrase inhibitor YacG	-
RAM00_RS02320 (RAM00_02315)	zapD	557327..558079 (-)	753	WP_025329860.1	cell division protein ZapD	-
RAM00_RS02325 (RAM00_02320)	coaE	558085..558699 (-)	615	WP_078475026.1	dephospho-CoA kinase	-
RAM00_RS02330 (RAM00_02325)	pilD	558696..559547 (-)	852	WP_078475025.1	A24 family peptidase	Machinery gene
RAM00_RS02335 (RAM00_02330)	pilG	559554..560786 (-)	1233	WP_025329863.1	type II secretion system F family protein	Machinery gene
RAM00_RS02340 (RAM00_02335)	pilF	560835..562514 (-)	1680	WP_037392184.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RAM00_RS02345 (RAM00_02340)	recJ	562716..564413 (-)	1698	WP_306176224.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31285.23 Da
• Isoelectric Point: 8.2995

>NTDB_id=868782 RAM00_RS02330 WP_078475025.1 558696..559547(-) (pilD) [Snodgrassella alvi strain K-FP26]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSRFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLVL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=868782 RAM00_RS02330 WP_078475025.1 558696..559547(-) (pilD) [Snodgrassella alvi strain K-FP26]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCGCTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTAGAATTATT
AACCGGTATTGCGTTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCTGAAACCCAGCTGTTGCCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCGTTGGGCTATCTGAGTTTGTG
GTCACTTTTCTGGTTATTCAAACTACTGACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTGCCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTGTTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.716	94.7	0.537
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Vibrio cholerae strain A1552	49.104	98.587	0.484
pilD	Acinetobacter nosocomialis M2	50.185	95.76	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445