Detailed information NTG0868758

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RAM05_RS02615
• Genome accession: NZ_CP132375
• Coordinates: 601376..602227 (-)
• Length: 283 a.a.
• NCBI ID: WP_025329862.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain wkB9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 596376..607227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM05_RS02580 (RAM05_02580)	murA	596483..597742 (-)	1260	WP_025329855.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
RAM05_RS02585 (RAM05_02585)	-	597782..598030 (-)	249	WP_025329856.1	BolA family protein	-
RAM05_RS02590 (RAM05_02590)	-	598085..598846 (-)	762	WP_038648602.1	ABC transporter permease	-
RAM05_RS02595 (RAM05_02595)	-	598843..599763 (-)	921	WP_025329858.1	ABC transporter ATP-binding protein	-
RAM05_RS02600 (RAM05_02600)	yacG	599810..600007 (-)	198	WP_025329859.1	DNA gyrase inhibitor YacG	-
RAM05_RS02605 (RAM05_02605)	zapD	600007..600759 (-)	753	WP_025329860.1	cell division protein ZapD	-
RAM05_RS02610 (RAM05_02610)	coaE	600765..601379 (-)	615	WP_025329861.1	dephospho-CoA kinase	-
RAM05_RS02615 (RAM05_02615)	pilD	601376..602227 (-)	852	WP_025329862.1	A24 family peptidase	Machinery gene
RAM05_RS02620 (RAM05_02620)	pilG	602234..603466 (-)	1233	WP_025329863.1	type II secretion system F family protein	Machinery gene
RAM05_RS02625 (RAM05_02625)	pilF	603515..605194 (-)	1680	WP_025329864.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RAM05_RS02630 (RAM05_02630)	recJ	605396..607093 (-)	1698	WP_025329865.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31294.24 Da
• Isoelectric Point: 8.0985

>NTDB_id=868758 RAM05_RS02615 WP_025329862.1 601376..602227(-) (pilD) [Snodgrassella alvi strain wkB9]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSHFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPIAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=868758 RAM05_RS02615 WP_025329862.1 601376..602227(-) (pilD) [Snodgrassella alvi strain wkB9]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCACTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCACGCTATTTTTGCGTGGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTATTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCCGAAACCCAGCTGTTACCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCATTAGGCTATCTGAGCTTGTG
GTCACTTTTCTGGTTATTCAAACTACTAACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTGCCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTATTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.716	94.7	0.537
pilD	Vibrio cholerae strain A1552	49.462	98.587	0.488
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Acinetobacter nosocomialis M2	50.554	95.76	0.484
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449