Detailed information NTG0868732

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RAM23_RS02380
• Genome accession: NZ_CP132374
• Coordinates: 564524..565375 (-)
• Length: 283 a.a.
• NCBI ID: WP_078475025.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain wkB339
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 559524..570375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM23_RS02345 (RAM23_02340)	murA	559631..560890 (-)	1260	WP_084547387.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
RAM23_RS02350 (RAM23_02345)	-	560930..561178 (-)	249	WP_025329856.1	BolA family protein	-
RAM23_RS02355 (RAM23_02350)	-	561233..561994 (-)	762	WP_078475028.1	ABC transporter permease	-
RAM23_RS02360 (RAM23_02355)	-	561991..562911 (-)	921	WP_025329858.1	ABC transporter ATP-binding protein	-
RAM23_RS02365 (RAM23_02360)	yacG	562958..563155 (-)	198	WP_078475027.1	DNA gyrase inhibitor YacG	-
RAM23_RS02370 (RAM23_02365)	zapD	563155..563907 (-)	753	WP_025329860.1	cell division protein ZapD	-
RAM23_RS02375 (RAM23_02370)	coaE	563913..564527 (-)	615	WP_078475026.1	dephospho-CoA kinase	-
RAM23_RS02380 (RAM23_02375)	pilD	564524..565375 (-)	852	WP_078475025.1	A24 family peptidase	Machinery gene
RAM23_RS02385 (RAM23_02380)	pilG	565382..566614 (-)	1233	WP_100125701.1	type II secretion system F family protein	Machinery gene
RAM23_RS02390 (RAM23_02385)	pilF	566663..568342 (-)	1680	WP_100125700.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RAM23_RS02395 (RAM23_02390)	recJ	568543..570240 (-)	1698	WP_100125699.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31285.23 Da
• Isoelectric Point: 8.2995

>NTDB_id=868732 RAM23_RS02380 WP_078475025.1 564524..565375(-) (pilD) [Snodgrassella alvi strain wkB339]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSRFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLVL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=868732 RAM23_RS02380 WP_078475025.1 564524..565375(-) (pilD) [Snodgrassella alvi strain wkB339]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCGCTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTAGAATTATT
AACCGGTATTGCGTTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCTGAAACCCAGCTGTTGCCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCGTTGGGCTATCTGAGTTTGTG
GTCACTTTTCTGGTTATTCAAACTACTGACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTGCCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTGTTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.716	94.7	0.537
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Vibrio cholerae strain A1552	49.104	98.587	0.484
pilD	Acinetobacter nosocomialis M2	50.185	95.76	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445