Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM31_RS11610 Genome accession   NZ_CP132368
Coordinates   2414157..2414552 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain UNC_SA44     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2409157..2419552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM31_RS11585 (RAM31_11585) thiE 2409619..2410260 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  RAM31_RS11590 (RAM31_11590) thiM 2410253..2411053 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  RAM31_RS11595 (RAM31_11595) thiD 2411037..2411867 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RAM31_RS11600 (RAM31_11600) tenA 2411860..2412549 (-) 690 WP_000396077.1 thiaminase II -
  RAM31_RS11605 (RAM31_11605) sceD 2413073..2413768 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  RAM31_RS11610 (RAM31_11610) ssb 2414157..2414552 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  RAM31_RS11615 (RAM31_11615) - 2414746..2415186 (+) 441 WP_000846746.1 YwpF-like family protein -
  RAM31_RS11620 (RAM31_11620) fabZ 2415244..2415684 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RAM31_RS11625 (RAM31_11625) murA 2415718..2416983 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RAM31_RS11630 (RAM31_11630) - 2417094..2417327 (-) 234 WP_000384523.1 DUF1146 family protein -
  RAM31_RS11635 (RAM31_11635) - 2417459..2417551 (-) 93 WP_031864518.1 hypothetical protein -
  RAM31_RS11640 (RAM31_11640) - 2417889..2418293 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=868640 RAM31_RS11610 WP_000932692.1 2414157..2414552(-) (ssb) [Staphylococcus aureus strain UNC_SA44]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=868640 RAM31_RS11610 WP_000932692.1 2414157..2414552(-) (ssb) [Staphylococcus aureus strain UNC_SA44]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992