Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RAB70_RS09070 Genome accession   NZ_CP132342
Coordinates   2143378..2144766 (-) Length   462 a.a.
NCBI ID   WP_148828468.1    Uniprot ID   -
Organism   Xanthomonas sontii strain PPL1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2138378..2149766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB70_RS09050 (RAB70_09050) - 2138682..2139632 (-) 951 WP_148828472.1 YbhN family protein -
  RAB70_RS09055 (RAB70_09055) - 2139629..2140417 (-) 789 WP_148828471.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  RAB70_RS09060 (RAB70_09060) - 2140440..2141297 (-) 858 WP_148828470.1 glycosyltransferase family 2 protein -
  RAB70_RS09065 (RAB70_09065) pilB 2141428..2143161 (+) 1734 WP_148828469.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RAB70_RS09070 (RAB70_09070) pilR 2143378..2144766 (-) 1389 WP_148828468.1 sigma-54 dependent transcriptional regulator Regulator
  RAB70_RS09075 (RAB70_09075) - 2144849..2146462 (-) 1614 WP_148828467.1 PAS domain-containing sensor histidine kinase -
  RAB70_RS09080 (RAB70_09080) sucC 2146854..2148023 (+) 1170 WP_010342227.1 ADP-forming succinate--CoA ligase subunit beta -
  RAB70_RS09085 (RAB70_09085) sucD 2148046..2148921 (+) 876 WP_026144653.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49863.25 Da        Isoelectric Point: 6.6702

>NTDB_id=868276 RAB70_RS09070 WP_148828468.1 2143378..2144766(-) (pilR) [Xanthomonas sontii strain PPL1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNSDSRAAPPPPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARSAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKNHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=868276 RAB70_RS09070 WP_148828468.1 2143378..2144766(-) (pilR) [Xanthomonas sontii strain PPL1]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCAAGCATTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCACTGGAACTCAACAGCGACAGCCGCGCCGCGCCGCCGCCGCCGG
CCCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGCCCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCTCCGCCGGCCCCTTCGTCCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAACCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCCGCCCTGGA
CGCACTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAGCGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCGGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAACTGGGCATCACCTTTCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.609

99.567

0.623
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472