Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q8L25_RS08480 Genome accession   NZ_CP132339
Coordinates   1873453..1874505 (+) Length   350 a.a.
NCBI ID   WP_308924438.1    Uniprot ID   -
Organism   Janthinobacterium sp. J1-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868453..1879505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8L25_RS08455 - 1869656..1870594 (+) 939 WP_308925691.1 ABC transporter substrate-binding protein -
  Q8L25_RS08460 - 1870644..1871423 (-) 780 WP_308924434.1 alpha/beta hydrolase -
  Q8L25_RS08465 - 1871621..1872046 (-) 426 WP_308924435.1 MarR family transcriptional regulator -
  Q8L25_RS08470 - 1872276..1873079 (+) 804 WP_308924436.1 cytochrome c biogenesis protein CcsA -
  Q8L25_RS08475 - 1873076..1873336 (+) 261 WP_308924437.1 PP0621 family protein -
  Q8L25_RS08480 pilR 1873453..1874505 (+) 1053 WP_308924438.1 sigma-54 dependent transcriptional regulator Regulator
  Q8L25_RS08485 - 1875152..1878106 (+) 2955 WP_308924439.1 ribonucleoside-diphosphate reductase subunit alpha -
  Q8L25_RS08490 - 1878172..1879323 (+) 1152 WP_308924440.1 ribonucleotide-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 36977.94 Da        Isoelectric Point: 9.8025

>NTDB_id=868263 Q8L25_RS08480 WP_308924438.1 1873453..1874505(+) (pilR) [Janthinobacterium sp. J1-1]
MPSSRTGAAGGHLAPIAKDSIPQLSGSSAAMQALRAQIVRIAASGAPVAIRGESGSGKELVARAIHAQGARADGPFVAVN
CGAIPEGLMEAELFGCRPGAYTGALHERQGLFQAADGGSLLLDEVDDVPLAMQVKLLRALQERRVRKLGGSTDEAVDVRI
LCASQHGLARGVAAGTFRQDLYYRLNVIELAVPPLRERLGDLPALCDAILARLAPRQDMHLAPAVLAALARHAFPGNVRE
LENLLERALAFADGGMITVDGLGLPVAVPAAVTALNAGLPGRQLPLPGMGHGGAPIVPLQLFLLQTEREMILQALAQTRY
HRARAARQLGISVRQLRYRMQKLQLREPPG

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=868263 Q8L25_RS08480 WP_308924438.1 1873453..1874505(+) (pilR) [Janthinobacterium sp. J1-1]
ATGCCCAGCTCGCGTACCGGGGCCGCCGGCGGCCATCTCGCGCCCATCGCTAAAGATTCCATACCGCAACTGAGCGGCAG
CTCGGCCGCCATGCAGGCGCTGAGGGCGCAGATCGTGCGCATCGCCGCCTCCGGCGCGCCGGTGGCGATCCGCGGCGAGT
CGGGCAGCGGCAAGGAGCTGGTGGCGCGCGCCATCCACGCCCAGGGCGCGCGCGCCGATGGCCCTTTCGTGGCCGTCAAT
TGCGGCGCCATCCCCGAGGGCCTGATGGAAGCCGAACTGTTCGGCTGCCGTCCGGGCGCCTATACGGGCGCGCTGCACGA
ACGGCAGGGCCTGTTCCAGGCGGCCGACGGCGGCAGCCTGCTGCTCGACGAGGTCGATGATGTGCCTTTGGCGATGCAGG
TCAAGCTGTTGCGTGCGCTGCAGGAGCGCCGCGTGCGCAAACTGGGCGGCAGCACCGACGAAGCCGTCGACGTGCGCATC
CTGTGCGCCAGCCAGCACGGACTGGCGCGCGGCGTGGCGGCCGGCACCTTTCGCCAGGATCTGTATTACCGCCTGAACGT
GATCGAACTGGCCGTGCCGCCCTTGCGCGAGCGGCTGGGCGACTTGCCGGCCTTGTGCGATGCCATCCTGGCCCGCCTGG
CGCCACGGCAAGACATGCACCTGGCGCCGGCGGTCCTGGCGGCGCTGGCGCGCCATGCTTTTCCCGGCAATGTGCGCGAA
CTGGAAAACCTGCTGGAGCGGGCGCTGGCCTTTGCCGATGGCGGCATGATCACGGTCGATGGGCTGGGCTTGCCTGTGGC
GGTACCGGCGGCGGTGACGGCGCTGAACGCCGGCTTGCCCGGCCGGCAATTGCCGCTGCCCGGCATGGGGCATGGCGGCG
CGCCTATCGTGCCGCTGCAGCTGTTCCTGCTGCAAACCGAGCGCGAGATGATCTTGCAGGCCCTGGCGCAAACGCGCTAC
CACCGCGCGCGCGCGGCGCGGCAACTGGGCATCAGCGTGCGCCAGCTGCGCTACCGCATGCAAAAATTGCAACTGCGCGA
GCCGCCGGGCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(305-343)

Sigma-54 interaction domain (Sigma54_activat)

(25-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.03

94.286

0.5
  pilR Acinetobacter baumannii strain A118

40.95

96.286

0.394
  luxO Vibrio cholerae strain A1552

39.752

92

0.366