Detailed information NTG0868213

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: RAL92_RS08770
• Genome accession: NZ_CP132337
• Coordinates: 1865471..1867693 (+)
• Length: 740 a.a.
• NCBI ID: WP_346842035.1
• Uniprot ID: -
• Organism: Pseudomonas otitidis strain Tg_9B
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1860471..1872693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAL92_RS08740 (RAL92_08745)	-	1860572..1860865 (-)	294	WP_346842034.1	phosphodiesterase	-
RAL92_RS08745 (RAL92_08750)	-	1860870..1861451 (-)	582	WP_044404965.1	PilZ domain-containing protein	-
RAL92_RS08750 (RAL92_08755)	-	1861548..1862798 (+)	1251	WP_172433035.1	lipoprotein-releasing ABC transporter permease subunit	-
RAL92_RS08755 (RAL92_08760)	lolD	1862800..1863483 (+)	684	WP_160481182.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
RAL92_RS08760 (RAL92_08765)	-	1863485..1864729 (+)	1245	WP_074968643.1	lipoprotein-releasing ABC transporter permease subunit	-
RAL92_RS08765 (RAL92_08770)	-	1864793..1865323 (-)	531	WP_107328906.1	DUF2062 domain-containing protein	-
RAL92_RS08770 (RAL92_08775)	comA	1865471..1867693 (+)	2223	WP_346842035.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
RAL92_RS08775 (RAL92_08780)	exbB	1867766..1868401 (+)	636	WP_044404948.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
RAL92_RS08780 (RAL92_08785)	-	1868398..1868841 (+)	444	WP_346842036.1	biopolymer transporter ExbD	-
RAL92_RS08785 (RAL92_08790)	lpxK	1868841..1869845 (+)	1005	WP_346842037.1	tetraacyldisaccharide 4'-kinase	-
RAL92_RS08790 (RAL92_08795)	-	1869881..1870066 (+)	186	WP_069561688.1	Trm112 family protein	-
RAL92_RS08795 (RAL92_08800)	kdsB	1870066..1870830 (+)	765	WP_346842038.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RAL92_RS08800 (RAL92_08805)	-	1870830..1871291 (+)	462	WP_208276502.1	low molecular weight protein-tyrosine-phosphatase	-
RAL92_RS08805 (RAL92_08810)	murB	1871288..1872307 (+)	1020	WP_346842039.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79503.93 Da
• Isoelectric Point: 9.1378

>NTDB_id=868213 RAL92_RS08770 WP_346842035.1 1865471..1867693(+) (comA) [Pseudomonas otitidis strain Tg_9B]
MRGFWLALAGGLLALRFLPALPPGWLLLGLAGIGALLLPWRTRALGVALIGFAWACHCAHVALDDRLDPALDGTTRWLQG
QVVGLPQQEGGVVRFELVPAAIEGLRLPGRMRVSWYGGLEVRSGETWRLAVTLRRPRGLVNPHAFDYEAWLLARHIGATG
TVKAGERINAAEGTGAWRDDLRQAIHHAEARGRNGTIAALVLGDGSGLSSRDWRHLQDTGTVHLMVISGQHISLLALLLY
GVVAALGRLGLWPTRLPWLPCACALALAGALGYGALAGFDVPVQRACLMTALVLLWRLRFRRLGVVTPLLAVLCIVLLVD
PLASLQAGFWLSFAAVALLVLVFAGRLSSLPAWRSAWRAQWTLSLALTPALMALALPISLSGPLANLVAVPWVSFVSVPL
SLAGTALHAVPGLGESLLWLAGLSLEGLFLLLGWIAEAMPAWQAPALAVWTWALVLLGCLLLILPPALPFRLPGLLLLVL
LVWPPLQRPAPGTADVRVLDVGQGLAVLVLTEHHALLYDAGPRQGGFDLGERVVVPALRGLGVRHLDELLLSHADNDHSG
GAEAVVRALSVARVISGEVERLPPGLNAQPCEARQWEWDGVHLRTWRWPEARDSNDRSCVLTLEANGERLHLTGDLGQAA
EAAWVESGEPLAADWLLAPHHGSRSSSSARLLQAVRPRGALISRGARNAFGHPHPQVLARYRALPAALYDTAESGALLIR
LGTHGEVSGLRSQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=868213 RAL92_RS08770 WP_346842035.1 1865471..1867693(+) (comA) [Pseudomonas otitidis strain Tg_9B]
ATGCGAGGTTTCTGGCTGGCCCTGGCCGGCGGGTTGCTGGCGCTGCGCTTCCTGCCGGCACTGCCGCCCGGTTGGCTGCT
GCTGGGGCTGGCGGGCATCGGCGCGCTGCTGCTGCCCTGGCGGACGCGAGCACTGGGCGTTGCCCTGATCGGCTTCGCCT
GGGCTTGCCACTGCGCCCACGTCGCCCTCGACGACCGGCTTGACCCGGCGCTGGACGGTACCACCCGCTGGCTGCAGGGG
CAGGTGGTCGGCTTGCCGCAACAGGAGGGCGGCGTGGTGCGTTTCGAACTGGTGCCCGCCGCCATCGAAGGGCTGCGCTT
GCCCGGGCGGATGCGGGTGTCCTGGTACGGCGGGCTGGAGGTGCGCAGCGGCGAGACCTGGCGACTGGCCGTCACCCTTC
GCCGTCCGCGCGGCCTGGTGAATCCCCACGCCTTCGACTACGAGGCCTGGCTGCTGGCCCGGCATATCGGCGCCACCGGC
ACTGTGAAGGCGGGCGAACGGATCAACGCGGCCGAAGGGACCGGCGCCTGGCGTGATGACCTGCGCCAGGCCATCCACCA
TGCCGAGGCTCGGGGGCGCAACGGCACCATCGCCGCGCTGGTCCTGGGCGACGGCTCCGGCCTCAGCAGCCGCGACTGGC
GCCACCTGCAGGACACCGGCACGGTCCACCTGATGGTCATCTCCGGGCAGCACATCTCCCTGCTGGCGCTGCTGCTCTAC
GGTGTCGTGGCCGCCCTGGGCCGGCTCGGGCTCTGGCCAACGCGCCTGCCCTGGCTGCCCTGTGCCTGCGCGCTGGCCCT
GGCCGGTGCCCTCGGCTATGGGGCGCTGGCCGGGTTCGACGTACCGGTGCAGCGCGCCTGCCTGATGACCGCCCTGGTGC
TGCTCTGGCGCCTGCGTTTCCGCCGGCTCGGGGTGGTCACGCCGCTGTTGGCGGTGCTCTGCATCGTGCTGCTGGTGGAC
CCGCTAGCCTCCCTGCAGGCGGGCTTCTGGCTCTCCTTCGCGGCCGTGGCGCTGCTGGTGCTGGTGTTCGCCGGGCGCCT
GAGCAGCCTGCCGGCCTGGCGCAGTGCGTGGCGGGCACAGTGGACCCTGAGCCTGGCGCTGACTCCGGCGCTGATGGCTC
TTGCCCTGCCCATCAGCCTCAGCGGCCCCCTGGCCAACCTGGTGGCGGTGCCCTGGGTCAGCTTCGTCTCGGTGCCGCTG
TCCCTGGCCGGCACGGCCCTGCACGCCGTACCCGGCCTGGGTGAAAGCCTGCTGTGGCTGGCGGGGCTTTCCCTGGAGGG
GCTCTTCCTTCTATTGGGCTGGATCGCCGAGGCGATGCCGGCCTGGCAGGCGCCTGCGCTGGCGGTCTGGACCTGGGCCC
TGGTGCTGCTGGGCTGTCTGCTGCTGATCCTGCCGCCGGCGCTGCCCTTTCGCCTGCCGGGCCTGCTGTTGCTGGTGCTG
CTGGTTTGGCCGCCCCTGCAGCGGCCCGCGCCCGGTACGGCGGATGTCCGCGTGCTGGACGTAGGGCAGGGCCTGGCGGT
GCTGGTGCTCACCGAGCACCACGCCTTGCTGTATGACGCCGGCCCGCGCCAGGGCGGCTTCGACCTGGGCGAGCGGGTGG
TGGTGCCGGCCCTGCGCGGGCTGGGTGTACGGCATCTGGACGAGTTGCTGCTGAGCCACGCCGACAACGACCATTCCGGC
GGGGCCGAGGCTGTGGTGCGTGCCCTGTCCGTGGCACGGGTGATCAGCGGCGAGGTGGAGCGCCTGCCACCCGGCCTCAA
CGCTCAGCCCTGCGAAGCCCGCCAGTGGGAGTGGGATGGCGTGCACCTGCGCACCTGGCGCTGGCCCGAGGCCCGCGACA
GCAATGATCGCTCCTGCGTGCTCACCCTCGAGGCCAACGGCGAGCGCCTGCACCTGACCGGTGATCTCGGCCAGGCCGCC
GAAGCCGCCTGGGTGGAGAGCGGCGAGCCCCTTGCAGCGGACTGGCTGCTGGCGCCCCACCATGGCAGCCGCAGCTCCTC
CTCGGCGCGCCTGCTGCAGGCGGTGCGGCCGCGCGGGGCGCTGATCTCCCGGGGCGCGCGCAACGCCTTCGGCCATCCCC
ATCCCCAGGTGCTGGCGCGTTACCGTGCTCTGCCGGCGGCTCTTTACGACACCGCCGAGTCCGGCGCGCTGCTGATTCGC
CTGGGCACCCACGGCGAGGTGTCGGGACTGCGGAGCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

• Competence protein (Competence) (200-465)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.699	97.027	0.599
comA	Ralstonia pseudosolanacearum GMI1000	34.958	100	0.397