Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RAL92_RS08775 Genome accession   NZ_CP132337
Coordinates   1867766..1868401 (+) Length   211 a.a.
NCBI ID   WP_044404948.1    Uniprot ID   A0A0D6SU67
Organism   Pseudomonas otitidis strain Tg_9B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862766..1873401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL92_RS08755 (RAL92_08760) lolD 1862800..1863483 (+) 684 WP_160481182.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RAL92_RS08760 (RAL92_08765) - 1863485..1864729 (+) 1245 WP_074968643.1 lipoprotein-releasing ABC transporter permease subunit -
  RAL92_RS08765 (RAL92_08770) - 1864793..1865323 (-) 531 WP_107328906.1 DUF2062 domain-containing protein -
  RAL92_RS08770 (RAL92_08775) comA 1865471..1867693 (+) 2223 WP_346842035.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RAL92_RS08775 (RAL92_08780) exbB 1867766..1868401 (+) 636 WP_044404948.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RAL92_RS08780 (RAL92_08785) - 1868398..1868841 (+) 444 WP_346842036.1 biopolymer transporter ExbD -
  RAL92_RS08785 (RAL92_08790) lpxK 1868841..1869845 (+) 1005 WP_346842037.1 tetraacyldisaccharide 4'-kinase -
  RAL92_RS08790 (RAL92_08795) - 1869881..1870066 (+) 186 WP_069561688.1 Trm112 family protein -
  RAL92_RS08795 (RAL92_08800) kdsB 1870066..1870830 (+) 765 WP_346842038.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RAL92_RS08800 (RAL92_08805) - 1870830..1871291 (+) 462 WP_208276502.1 low molecular weight protein-tyrosine-phosphatase -
  RAL92_RS08805 (RAL92_08810) murB 1871288..1872307 (+) 1020 WP_346842039.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22949.11 Da        Isoelectric Point: 7.2820

>NTDB_id=868214 RAL92_RS08775 WP_044404948.1 1867766..1868401(+) (exbB) [Pseudomonas otitidis strain Tg_9B]
MWELVKAGGWMMLPIILSSVVATAIIAERLWTLRKNRVAPPQLLGQVWRMVKDKQLNSQKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFGGFMDNGMANAPALAGGIGKALITTAA
GLMVAIPAVFFHRFLLRRVDELVVAMEQDAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=868214 RAL92_RS08775 WP_044404948.1 1867766..1868401(+) (exbB) [Pseudomonas otitidis strain Tg_9B]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCGTGGTCGCCACCGCCATCATCGC
CGAGCGTCTCTGGACGCTGCGCAAGAACCGTGTCGCACCGCCGCAACTGCTGGGTCAGGTCTGGCGCATGGTCAAGGACA
AGCAGCTCAACAGCCAGAAGCTCAAGGAGCTGCGCGCCTCCTCGCCGCTGGGTGAGGTGCTCGCCGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCGTCCCGCGTCATCCACGAGCTGGAGCGCTACCT
CAACACCCTCGGCACCATTGCCGCCATGGGCCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCGAGATCTTCG
GCGGCTTCATGGACAACGGCATGGCCAACGCCCCGGCCCTGGCCGGCGGCATCGGCAAGGCGCTGATCACCACCGCCGCC
GGCCTGATGGTCGCCATCCCCGCCGTGTTCTTCCACCGCTTCCTGCTGCGTCGTGTCGACGAGCTGGTGGTGGCCATGGA
ACAGGACGCCATCAAGCTGGTGGAAGTGACCCAGGGTGACCGTGAAGTGGACTTCGCAGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6SU67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.095

100

0.801