Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q8X41_RS12685 Genome accession   NZ_CP132291
Coordinates   2571387..2571941 (-) Length   184 a.a.
NCBI ID   WP_397536681.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2566387..2576941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS12665 rplI 2567475..2567924 (-) 450 WP_397536677.1 50S ribosomal protein L9 -
  Q8X41_RS12670 - 2567921..2569897 (-) 1977 WP_397536678.1 DHH family phosphoesterase -
  Q8X41_RS12675 - 2569911..2570852 (-) 942 WP_397536679.1 YybS family protein -
  Q8X41_RS12680 rpsR 2571093..2571329 (-) 237 WP_397536680.1 30S ribosomal protein S18 -
  Q8X41_RS12685 ssbA 2571387..2571941 (-) 555 WP_397536681.1 single-stranded DNA-binding protein Machinery gene
  Q8X41_RS12690 rpsF 2571981..2572271 (-) 291 WP_397536682.1 30S ribosomal protein S6 -
  Q8X41_RS12695 - 2572439..2572996 (+) 558 WP_397536683.1 DUF3267 domain-containing protein -
  Q8X41_RS12700 ychF 2573045..2574145 (-) 1101 WP_397536684.1 redox-regulated ATPase YchF -
  Q8X41_RS12705 - 2574430..2574633 (-) 204 WP_397536685.1 DUF951 domain-containing protein -
  Q8X41_RS12710 - 2574636..2575526 (-) 891 WP_397536686.1 mechanosensitive ion channel family protein -
  Q8X41_RS12715 yyaC 2575600..2576196 (+) 597 WP_397536687.1 spore protease YyaC -
  Q8X41_RS12720 - 2576155..2576859 (-) 705 WP_397536688.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20113.94 Da        Isoelectric Point: 4.9627

>NTDB_id=868023 Q8X41_RS12685 WP_397536681.1 2571387..2571941(-) (ssbA) [Rummeliibacillus pycnus strain X33]
MINRVVLVGRLTKDPELRYTPGGAAVARFTLAVNRTFSNQQGERQADFINCVVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPRGAAGDRPQQGQSYGGQPSFNGGGQSYDQAPQQGNYQQPSYQQNQSPSQQNYTRV
DEDPFAPVSNGGGKVDVTEDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=868023 Q8X41_RS12685 WP_397536681.1 2571387..2571941(-) (ssbA) [Rummeliibacillus pycnus strain X33]
ATGATTAACCGTGTCGTACTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGCTACACACCAGGTGGCGCAGCCGTTGC
TCGTTTTACACTAGCTGTAAATAGAACGTTTTCTAACCAACAAGGTGAGAGACAAGCGGACTTCATCAATTGCGTTGTTT
GGCGTAAACAGGCTGAAAATACTGCAAACTTCTTGAAAAAAGGAAGCTTAGCAGGTGTTGAAGGTCGCATTCAAACAGGT
AGTTATGAAGGACAAGATGGTAAACGTGTTTACACAACTGAAGTTGTTGCAGATAGCGTTCAGTTCTTAGAACCACGCGG
AGCTGCTGGAGATCGTCCTCAACAAGGACAGTCATATGGCGGACAACCATCATTTAATGGTGGAGGTCAATCATACGACC
AAGCTCCACAACAAGGCAACTATCAACAGCCATCTTATCAACAGAATCAATCACCTAGTCAGCAGAATTATACACGTGTA
GATGAAGATCCATTTGCACCAGTTAGTAATGGTGGAGGGAAAGTCGACGTTACAGAAGACGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.239

100

0.592
  ssb Latilactobacillus sakei subsp. sakei 23K

51.63

100

0.516
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

57.609

0.37