Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHP61_RS06120 Genome accession   NZ_CP148214
Coordinates   1133264..1134037 (+) Length   257 a.a.
NCBI ID   WP_002918419.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1128264..1139037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS06105 (WHP61_06105) - 1129113..1131047 (-) 1935 WP_002934608.1 ribonuclease R family protein -
  WHP61_RS06110 (WHP61_06110) ilvC 1131166..1132188 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHP61_RS06115 (WHP61_06115) - 1132192..1133274 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  WHP61_RS06120 (WHP61_06120) dprA 1133264..1134037 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  WHP61_RS06125 (WHP61_06125) dprB 1134034..1134417 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  WHP61_RS06130 (WHP61_06130) - 1134446..1135285 (+) 840 WP_338877741.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP61_RS06135 (WHP61_06135) msrA 1135461..1135958 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP61_RS06140 (WHP61_06140) ppa 1136000..1136518 (-) 519 WP_002855031.1 inorganic diphosphatase -
  WHP61_RS06145 (WHP61_06145) adk 1136528..1137106 (-) 579 WP_002855137.1 adenylate kinase -
  WHP61_RS06150 (WHP61_06150) aspS 1137103..1138854 (-) 1752 WP_070289846.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28919.74 Da        Isoelectric Point: 7.7211

>NTDB_id=867976 WHP61_RS06120 WP_002918419.1 1133264..1134037(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0059]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=867976 WHP61_RS06120 WP_002918419.1 1133264..1134037(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0059]
ATGGCAAGTGAAATTTTGCCTGATGAGTTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATCGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459