Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP61_RS06125 Genome accession   NZ_CP148214
Coordinates   1134034..1134417 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1129034..1139417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS06105 (WHP61_06105) - 1129113..1131047 (-) 1935 WP_002934608.1 ribonuclease R family protein -
  WHP61_RS06110 (WHP61_06110) ilvC 1131166..1132188 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHP61_RS06115 (WHP61_06115) - 1132192..1133274 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  WHP61_RS06120 (WHP61_06120) dprA 1133264..1134037 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  WHP61_RS06125 (WHP61_06125) dprB 1134034..1134417 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  WHP61_RS06130 (WHP61_06130) - 1134446..1135285 (+) 840 WP_338877741.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP61_RS06135 (WHP61_06135) msrA 1135461..1135958 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP61_RS06140 (WHP61_06140) ppa 1136000..1136518 (-) 519 WP_002855031.1 inorganic diphosphatase -
  WHP61_RS06145 (WHP61_06145) adk 1136528..1137106 (-) 579 WP_002855137.1 adenylate kinase -
  WHP61_RS06150 (WHP61_06150) aspS 1137103..1138854 (-) 1752 WP_070289846.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=867977 WHP61_RS06125 WP_002918422.1 1134034..1134417(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0059]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=867977 WHP61_RS06125 WP_002918422.1 1134034..1134417(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0059]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449