Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   Q9317_RS07165 Genome accession   NZ_CP132230
Coordinates   1457852..1458853 (-) Length   333 a.a.
NCBI ID   WP_003101380.1    Uniprot ID   -
Organism   Streptococcus iniae strain BH15-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1452852..1463853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9317_RS07150 (Q9317_07150) thrS 1453061..1455001 (-) 1941 WP_003101371.1 threonine--tRNA ligase -
  Q9317_RS07155 (Q9317_07155) - 1455386..1456723 (-) 1338 WP_003101376.1 glycosyltransferase family 4 protein -
  Q9317_RS07160 (Q9317_07160) - 1456725..1457723 (-) 999 WP_305981537.1 glycosyltransferase family 4 protein -
  Q9317_RS07165 (Q9317_07165) ccpA 1457852..1458853 (-) 1002 WP_003101380.1 catabolite control protein A Regulator
  Q9317_RS07170 (Q9317_07170) - 1459025..1460110 (+) 1086 WP_003101382.1 Xaa-Pro peptidase family protein -
  Q9317_RS07175 (Q9317_07175) - 1460273..1460614 (-) 342 WP_003101385.1 hypothetical protein -
  Q9317_RS07180 (Q9317_07180) - 1460804..1461466 (+) 663 WP_003101387.1 NAD(P)H-dependent oxidoreductase -
  Q9317_RS07185 (Q9317_07185) - 1461477..1461857 (+) 381 WP_003101389.1 VOC family protein -
  Q9317_RS07190 (Q9317_07190) - 1461984..1462910 (+) 927 WP_003101392.1 glycosyltransferase family 2 protein -
  Q9317_RS07195 (Q9317_07195) - 1463054..1463737 (+) 684 WP_003101394.1 DUF969 domain-containing protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36613.69 Da        Isoelectric Point: 5.7671

>NTDB_id=867896 Q9317_RS07165 WP_003101380.1 1457852..1458853(-) (ccpA) [Streptococcus iniae strain BH15-2]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKAAVSEIVDILAENHQKIAFVSGPLIDDINGKVRLSGYKEGLKKNKLSYKEGLVFEAKYSYRDGFDLAQRVINSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIFTSNDSPVVEYTSPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKRRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=867896 Q9317_RS07165 WP_003101380.1 1457852..1458853(-) (ccpA) [Streptococcus iniae strain BH15-2]
ATGAACACAGATGATACAATTACGATATATGATGTTGCTCGTGAAGCAGGTGTTTCAATGGCAACAGTCAGCCGTGTTGT
AAATGGTAATAAAAACGTTAAGGAAAATACCCGTAAGAAAGTTTTAGAAGTTATCGACCGTTTAGACTACCGCCCAAATG
CTGTAGCTAGAGGTCTAGCAAGTAAAAAAACAACAACAGTTGGTGTGGTTATTCCTAACATTGCTAATGCTTATTTTTCA
ATTTTGGCTAAAGGAATTGATGATATTGCAGCAATGTACAAATATAATATTGTTCTGGCATCTAGTGATGAGGATGATGA
TAAGGAAGTTAACGTTGTTAACACTTTGTTTGCAAAACAAGTTGATGGCATCATTTTTATGGGGCATCATTTAACAGAAA
AAATCCGTGCAGAGTTTTCTCGTTCACGGACACCTATTGTTCTTGCTGGAACAGTTGATTTAGAACATCAATTACCAAGT
GTTAATATTGATTACAAGGCGGCAGTTTCTGAAATTGTTGATATTTTGGCTGAAAACCATCAAAAAATTGCTTTTGTTTC
AGGACCGCTTATTGATGATATTAATGGAAAAGTAAGACTTTCAGGTTATAAAGAAGGCCTTAAAAAGAATAAATTAAGTT
ACAAAGAAGGCCTTGTTTTTGAAGCGAAATACTCATACAGAGACGGTTTTGACTTGGCACAACGTGTGATTAATTCAGGA
GCAACTGCTGCCTATGTTGGAGAAGATGAATTAGCAGCAGGTTTGTTAAATGGTCTTTTTGCAGCAGGTAAAAGTGTTCC
AGAAGATTTTGAGATTTTCACAAGTAATGATTCACCTGTTGTTGAATACACAAGCCCTAACTTAAGCTCAATCAGCCAAC
CAGTTTATGACTTAGGTGCTGTAAGTATGCGTATGTTAACAAAAATCATGAACAAAGAAGAACTTGAAGAAAAAGAAATC
CTGTTAAATCATGGCATTAAACGCCGTGGCACAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

100

0.79

  ccpA Streptococcus pneumoniae D39

77.177

100

0.772

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.381

99.399

0.541