Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   WHP58_RS03840 Genome accession   NZ_CP148206
Coordinates   713331..715304 (+) Length   657 a.a.
NCBI ID   WP_052823167.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 708331..720304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP58_RS03815 (WHP58_03815) cipA 709076..710436 (+) 1361 Protein_743 DUF2972 domain-containing protein -
  WHP58_RS03820 (WHP58_03820) priA 710446..712299 (-) 1854 WP_002852169.1 primosomal protein N' -
  WHP58_RS03825 (WHP58_03825) Cj0683 712281..712718 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP58_RS03830 (WHP58_03830) - 712715..712957 (-) 243 WP_002854947.1 hypothetical protein -
  WHP58_RS03835 (WHP58_03835) - 712947..713177 (-) 231 WP_002852327.1 hypothetical protein -
  WHP58_RS03840 (WHP58_03840) uvrB 713331..715304 (+) 1974 WP_052823167.1 excinuclease ABC subunit UvrB Machinery gene
  WHP58_RS03845 (WHP58_03845) kdpD 715406..717226 (-) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  WHP58_RS03850 (WHP58_03850) - 717229..717792 (-) 564 Protein_750 potassium-transporting ATPase subunit C -
  WHP58_RS03855 (WHP58_03855) kdpB 717828..719874 (-) 2047 Protein_751 potassium-transporting ATPase subunit KdpB -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75947.56 Da        Isoelectric Point: 6.8371

>NTDB_id=867787 WHP58_RS03840 WP_052823167.1 713331..715304(+) (uvrB) [Campylobacter jejuni strain Z1323CCJ0066]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLISTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=867787 WHP58_RS03840 WP_052823167.1 713331..715304(+) (uvrB) [Campylobacter jejuni strain Z1323CCJ0066]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGCATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGATAGCTCTACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGATATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGTAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAACGGGTTGAATTTGATCTTGAAATGC
TTATAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAACATCTTTCATCAAATCATGCGTCCTACGGGACTGCTTGATCCTTTGATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACTGTAC
TGACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAGATTACAAAATCT
ATGCAAGAAGCTATGGATACTACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAAAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAACTTGTCAAAGAATTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

UvrB interaction domain (UvrB_inter)

(158-246)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Ultra-violet resistance protein B (UvrB)

(552-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502