Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q9G86_RS15940 Genome accession   NZ_CP132200
Coordinates   3131719..3132012 (-) Length   97 a.a.
NCBI ID   WP_157812362.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain L1     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3132807..3132932 3131719..3132012 flank 795


Gene organization within MGE regions


Location: 3131719..3132932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS15940 (Q9G86_15940) rcrQ 3131719..3132012 (-) 294 WP_157812362.1 ATP-binding cassette domain-containing protein Regulator
  Q9G86_RS15945 (Q9G86_15945) - 3132109..3132771 (-) 663 WP_276565377.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10796.36 Da        Isoelectric Point: 4.3396

>NTDB_id=867603 Q9G86_RS15940 WP_157812362.1 3131719..3132012(-) (rcrQ) [Bacillus thuringiensis strain L1]
MKFAYQPDRPLITDLNLVVEPGTRVAIVGQTGAGKTTLVNLLMRFYDIDAGEIAIDGININDMARDSLRHTFGMVLQDTW
LFGGTIHDNIALWETEC

Nucleotide


Download         Length: 294 bp        

>NTDB_id=867603 Q9G86_RS15940 WP_157812362.1 3131719..3132012(-) (rcrQ) [Bacillus thuringiensis strain L1]
GTGAAGTTCGCTTACCAGCCTGACCGTCCCCTTATTACCGATTTGAACCTAGTTGTTGAACCAGGAACACGTGTCGCAAT
CGTGGGACAGACGGGTGCTGGCAAGACAACATTAGTGAATTTGTTAATGCGATTCTATGATATTGATGCCGGTGAGATTG
CGATAGATGGTATTAATATTAACGATATGGCCCGTGATAGCTTACGCCATACTTTTGGGATGGTGCTACAGGATACTTGG
CTGTTTGGTGGGACAATCCATGACAATATCGCCTTATGGGAAACGGAATGCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(13-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.818

90.722

0.515
  rcrP Streptococcus mutans UA159

41.237

100

0.412
  comA Streptococcus pneumoniae D39

38.298

96.907

0.371
  comA Streptococcus pneumoniae R6

38.298

96.907

0.371
  comA Streptococcus pneumoniae Rx1

38.298

96.907

0.371
  comA Streptococcus mitis NCTC 12261

37.5

98.969

0.371
  comA Streptococcus mitis SK321

37.234

96.907

0.361
  comA Streptococcus pneumoniae TIGR4

37.234

96.907

0.361