Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Q9L40_RS13075 Genome accession   NZ_CP132190
Coordinates   1718471..1719103 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain DRC187     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713471..1724103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS13055 (Q9L40_13055) - 1713621..1714832 (+) 1212 WP_000215483.1 aspartate aminotransferase family protein -
  Q9L40_RS13060 (Q9L40_13060) astA 1714972..1715991 (+) 1020 WP_000962039.1 arginine N-succinyltransferase -
  Q9L40_RS13065 (Q9L40_13065) astD 1716001..1717458 (+) 1458 WP_305798959.1 succinylglutamate-semialdehyde dehydrogenase -
  Q9L40_RS13070 (Q9L40_13070) - 1717601..1718392 (+) 792 WP_000189093.1 DUF1338 domain-containing protein -
  Q9L40_RS13075 (Q9L40_13075) crp 1718471..1719103 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  Q9L40_RS13080 (Q9L40_13080) - 1719346..1720215 (-) 870 WP_001274666.1 phosphoribulokinase -
  Q9L40_RS13085 (Q9L40_13085) - 1720312..1720521 (-) 210 WP_000586561.1 YheU family protein -
  Q9L40_RS13090 (Q9L40_13090) - 1720630..1721619 (-) 990 WP_000206395.1 hydrolase -
  Q9L40_RS13095 (Q9L40_13095) - 1721616..1722101 (-) 486 WP_001278733.1 TIGR02444 family protein -
  Q9L40_RS13100 (Q9L40_13100) - 1722102..1724018 (-) 1917 WP_305798958.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=867521 Q9L40_RS13075 WP_000242749.1 1718471..1719103(-) (crp) [Vibrio cholerae strain DRC187]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=867521 Q9L40_RS13075 WP_000242749.1 1718471..1719103(-) (crp) [Vibrio cholerae strain DRC187]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGCATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467