Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   Q9L40_RS06320 Genome accession   NZ_CP132190
Coordinates   250919..253048 (-) Length   709 a.a.
NCBI ID   WP_305799464.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 245919..258048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS06300 (Q9L40_06300) kdsB 247212..247970 (-) 759 WP_000011333.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q9L40_RS06305 (Q9L40_06305) - 247970..248149 (-) 180 WP_000350068.1 Trm112 family protein -
  Q9L40_RS06310 (Q9L40_06310) lpxK 248130..249137 (-) 1008 WP_162891970.1 tetraacyldisaccharide 4'-kinase -
  Q9L40_RS06315 (Q9L40_06315) msbA 249140..250888 (-) 1749 WP_000052153.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  Q9L40_RS06320 (Q9L40_06320) comEC 250919..253048 (-) 2130 WP_305799464.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q9L40_RS06325 (Q9L40_06325) - 253171..253701 (+) 531 WP_305799356.1 DUF2062 domain-containing protein -
  Q9L40_RS06330 (Q9L40_06330) lolE 253816..255060 (-) 1245 WP_305799355.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  Q9L40_RS06335 (Q9L40_06335) lolD 255061..255747 (-) 687 WP_001061288.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  Q9L40_RS06340 (Q9L40_06340) lolC 255740..256948 (-) 1209 WP_305799354.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  Q9L40_RS06345 (Q9L40_06345) - 257124..257699 (+) 576 WP_217526275.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79799.98 Da        Isoelectric Point: 8.0138

>NTDB_id=867491 Q9L40_RS06320 WP_305799464.1 250919..253048(-) (comEC) [Vibrio cholerae strain DRC187]
MGLLGYHRAGRKFLGFVVAILIIVLQGNLIRDQSNVLYQAGPDIIIKGRADSFFRQTRYAHEGFALIYEVNGQSLGTLFQ
PRVRLTTPILLQPNDLFEFSATVKPVIGRLNEIGFDAEAHYMAQSVIARVSVKANTPYTISPQEDVRSSLQQKLVTLTQN
SPFQGIILALTFGERNGIDEQEWRALRNSGLIHLVAISGLHIGIAFSVGYFLGLGIMRLHAKLLWSPFVCGALLAVFYAW
LAGFTLPTQRALIMCLLNVALVMLAFPLSALKRILLTLGAVLVWSPFTSLSNSFWMSFLAVAIVLYQLASQSQRQVWWKA
LLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFWGLLLMVVWPGVATAYWPWVDWTFLPLDWALQF
ADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLGMIGLWWWFPSITPLWRMDVLDVGHGLAIVIEQDERAIVYDT
GSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSLHFT
VLWPPQAVSRAYNPHSCVIRMTDTQSNHSVMLSGDVTAMGEWLLARDGVQLQSDVMIVPHHGSKTSSTAEFIAQVNPKLA
IASVAKDNRWNLPNPQVVARYQAQQVEWLDTGQAGQISLFFYPEQLDWFTQRSLGWEPWYRQMLRKGVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=867491 Q9L40_RS06320 WP_305799464.1 250919..253048(-) (comEC) [Vibrio cholerae strain DRC187]
ATGGGTTTGCTCGGTTATCACCGGGCTGGCCGTAAATTCCTTGGCTTCGTAGTTGCCATACTAATCATTGTGCTACAAGG
CAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAGGGCCGGATATTATCATAAAAGGCCGTGCCGACAGCTTTT
TTAGGCAAACCCGTTATGCTCATGAAGGATTTGCCTTAATTTATGAGGTCAATGGCCAAAGCTTGGGCACATTGTTTCAG
CCTCGAGTACGCTTAACTACCCCTATTCTTTTGCAGCCGAATGATCTATTCGAATTTTCAGCGACAGTAAAGCCGGTTAT
TGGCCGACTCAACGAAATCGGTTTTGATGCAGAAGCTCATTATATGGCTCAATCTGTCATCGCTAGGGTGAGCGTTAAGG
CCAATACACCATACACAATTTCACCTCAAGAAGACGTTAGGTCAAGCTTGCAGCAAAAGCTTGTTACATTGACGCAAAAT
AGCCCTTTTCAAGGGATTATTTTAGCCCTGACGTTTGGCGAGCGAAACGGTATTGATGAGCAAGAGTGGCGAGCCTTACG
CAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGCACATTGGTATCGCTTTTAGTGTGGGTTATTTTCTCGGGC
TCGGCATAATGCGCCTTCATGCTAAGTTACTTTGGTCTCCTTTCGTGTGCGGGGCTTTACTGGCGGTGTTCTACGCTTGG
CTTGCCGGATTTACGTTGCCCACTCAGCGTGCATTGATCATGTGCTTACTCAATGTGGCGTTGGTGATGCTGGCTTTTCC
TCTTTCCGCGCTCAAGCGGATTTTACTCACCTTGGGCGCGGTCTTGGTTTGGTCACCCTTCACCTCACTTTCAAACAGTT
TCTGGATGTCGTTTTTGGCGGTCGCGATTGTACTCTACCAATTAGCAAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCT
CTGCTTTGGGCGCAGGTGTTCCTTGTCTGTTTAATGGCGCCGGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGC
AGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATTGTCCCAGCTTTGTTTTGGGGCCTATTACTTATGG
TGGTATGGCCCGGTGTTGCTACTGCTTACTGGCCTTGGGTGGATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTT
GCCGATGTAGGCTGGTGGGTGGTACCCAGCAAAGTACAAGGTGTGGTCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCG
ATTTATGAGCCTAAAAGCCTGCAGCTTATTGTTGGGTATGATTGGCTTATGGTGGTGGTTTCCCTCTATCACTCCGCTTT
GGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATTGTGATTGAGCAAGATGAGCGAGCGATAGTCTACGATACA
GGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGATTGAGCCTATGCTACAGCAGCGAGGGCTACGCCAAGTCGA
TGGGGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTGATTGGCAAGGTTTAGCTGAGCGCTGGCAACCCAATTGGA
TTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATCCGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACG
GTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCCGCATTCGTGTGTGATTCGTATGACTGATACTCAATCTAA
CCATTCTGTAATGCTCTCCGGGGATGTCACTGCTATGGGGGAGTGGCTGCTTGCTCGCGACGGAGTGCAGCTGCAAAGTG
ACGTGATGATTGTACCGCACCACGGCAGTAAAACGTCGTCCACTGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCG
ATTGCTTCTGTGGCGAAAGATAACCGCTGGAACTTGCCTAATCCGCAAGTCGTAGCACGTTATCAAGCCCAGCAAGTTGA
GTGGCTAGATACTGGACAAGCTGGGCAAATTAGCCTCTTTTTCTATCCAGAGCAGTTGGATTGGTTTACCCAACGCAGCC
TTGGCTGGGAGCCTTGGTATAGGCAGATGCTGCGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)

Competence protein (Competence)

(170-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

89.704

100

0.897
  comEC Vibrio parahaemolyticus RIMD 2210633

40.871

100

0.41
  comEC Vibrio campbellii strain DS40M4

40.762

100

0.408