Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   WHQ27_RS01250 Genome accession   NZ_CP148192
Coordinates   241779..243752 (-) Length   657 a.a.
NCBI ID   WP_052823167.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 236779..248752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ27_RS01235 (WHQ27_01235) kdpB 237210..239255 (+) 2046 WP_052823168.1 potassium-transporting ATPase subunit KdpB -
  WHQ27_RS01240 (WHQ27_01240) - 239291..239854 (+) 564 Protein_233 potassium-transporting ATPase subunit C -
  WHQ27_RS01245 (WHQ27_01245) kdpD 239857..241677 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  WHQ27_RS01250 (WHQ27_01250) uvrB 241779..243752 (-) 1974 WP_052823167.1 excinuclease ABC subunit UvrB Machinery gene
  WHQ27_RS01255 (WHQ27_01255) - 243906..244136 (+) 231 WP_002852327.1 hypothetical protein -
  WHQ27_RS01260 (WHQ27_01260) - 244126..244368 (+) 243 WP_002854947.1 hypothetical protein -
  WHQ27_RS01265 (WHQ27_01265) Cj0683 244365..244802 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ27_RS01270 (WHQ27_01270) priA 244784..246637 (+) 1854 WP_002852169.1 primosomal protein N' -
  WHQ27_RS01275 (WHQ27_01275) cipA 246647..248009 (-) 1363 Protein_240 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75947.56 Da        Isoelectric Point: 6.8371

>NTDB_id=867447 WHQ27_RS01250 WP_052823167.1 241779..243752(-) (uvrB) [Campylobacter jejuni strain Z1323CCJ0078]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLISTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=867447 WHQ27_RS01250 WP_052823167.1 241779..243752(-) (uvrB) [Campylobacter jejuni strain Z1323CCJ0078]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGCATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGATAGCTCTACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGATATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGTAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAACGGGTTGAATTTGATCTTGAAATGC
TTATAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAACATCTTTCATCAAATCATGCGTCCTACGGGACTGCTTGATCCTTTGATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACTGTAC
TGACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAGATTACAAAATCT
ATGCAAGAAGCTATGGATACTACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAAAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAACTTGTCAAAGAATTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

UvrB interaction domain (UvrB_inter)

(158-246)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Ultra-violet resistance protein B (UvrB)

(552-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502