Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHQ29_RS07500 Genome accession   NZ_CP148190
Coordinates   1447088..1447861 (-) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1442088..1452861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS07470 (WHQ29_07470) aspS 1442271..1444022 (+) 1752 WP_002875506.1 aspartate--tRNA ligase -
  WHQ29_RS07475 (WHQ29_07475) adk 1444019..1444597 (+) 579 WP_002859580.1 adenylate kinase -
  WHQ29_RS07480 (WHQ29_07480) ppa 1444607..1445125 (+) 519 WP_002867724.1 inorganic diphosphatase -
  WHQ29_RS07485 (WHQ29_07485) msrA 1445167..1445664 (+) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ29_RS07490 (WHQ29_07490) - 1445840..1446679 (-) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ29_RS07495 (WHQ29_07495) dprB 1446708..1447091 (-) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WHQ29_RS07500 (WHQ29_07500) dprA 1447088..1447861 (-) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  WHQ29_RS07505 (WHQ29_07505) - 1447851..1448933 (-) 1083 WP_052823171.1 divergent polysaccharide deacetylase family protein -
  WHQ29_RS07510 (WHQ29_07510) ilvC 1448937..1449959 (-) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHQ29_RS07515 (WHQ29_07515) - 1450078..1452012 (+) 1935 WP_052823172.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=867440 WHQ29_RS07500 WP_002858613.1 1447088..1447861(-) (dprA) [Campylobacter jejuni strain Z1323CCJ0080]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=867440 WHQ29_RS07500 WP_002858613.1 1447088..1447861(-) (dprA) [Campylobacter jejuni strain Z1323CCJ0080]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455