Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHQ29_RS07495 Genome accession   NZ_CP148190
Coordinates   1446708..1447091 (-) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1441708..1452091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS07470 (WHQ29_07470) aspS 1442271..1444022 (+) 1752 WP_002875506.1 aspartate--tRNA ligase -
  WHQ29_RS07475 (WHQ29_07475) adk 1444019..1444597 (+) 579 WP_002859580.1 adenylate kinase -
  WHQ29_RS07480 (WHQ29_07480) ppa 1444607..1445125 (+) 519 WP_002867724.1 inorganic diphosphatase -
  WHQ29_RS07485 (WHQ29_07485) msrA 1445167..1445664 (+) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ29_RS07490 (WHQ29_07490) - 1445840..1446679 (-) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ29_RS07495 (WHQ29_07495) dprB 1446708..1447091 (-) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WHQ29_RS07500 (WHQ29_07500) dprA 1447088..1447861 (-) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  WHQ29_RS07505 (WHQ29_07505) - 1447851..1448933 (-) 1083 WP_052823171.1 divergent polysaccharide deacetylase family protein -
  WHQ29_RS07510 (WHQ29_07510) ilvC 1448937..1449959 (-) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHQ29_RS07515 (WHQ29_07515) - 1450078..1452012 (+) 1935 WP_052823172.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=867439 WHQ29_RS07495 WP_002858579.1 1446708..1447091(-) (dprB) [Campylobacter jejuni strain Z1323CCJ0080]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=867439 WHQ29_RS07495 WP_002858579.1 1446708..1447091(-) (dprB) [Campylobacter jejuni strain Z1323CCJ0080]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449