Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHQ13_RS03355 Genome accession   NZ_CP148185
Coordinates   634629..635402 (+) Length   257 a.a.
NCBI ID   WP_002867721.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0087     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 629629..640402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ13_RS03340 (WHQ13_03340) - 630478..632412 (-) 1935 WP_002867720.1 ribonuclease R family protein -
  WHQ13_RS03345 (WHQ13_03345) ilvC 632531..633553 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHQ13_RS03350 (WHQ13_03350) - 633557..634639 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  WHQ13_RS03355 (WHQ13_03355) dprA 634629..635402 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  WHQ13_RS03360 (WHQ13_03360) dprB 635399..635782 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHQ13_RS03365 (WHQ13_03365) - 635811..636650 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ13_RS03370 (WHQ13_03370) msrA 636829..637326 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ13_RS03375 (WHQ13_03375) ppa 637368..637886 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHQ13_RS03380 (WHQ13_03380) adk 637896..638474 (-) 579 WP_002859580.1 adenylate kinase -
  WHQ13_RS03385 (WHQ13_03385) aspS 638471..640222 (-) 1752 WP_011049750.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28878.64 Da        Isoelectric Point: 6.4874

>NTDB_id=867360 WHQ13_RS03355 WP_002867721.1 634629..635402(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0087]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
TKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=867360 WHQ13_RS03355 WP_002867721.1 634629..635402(+) (dprA) [Campylobacter jejuni strain Z1323CCJ0087]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
ACAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455