Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHQ13_RS03360 Genome accession   NZ_CP148185
Coordinates   635399..635782 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain Z1323CCJ0087     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 630399..640782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ13_RS03340 (WHQ13_03340) - 630478..632412 (-) 1935 WP_002867720.1 ribonuclease R family protein -
  WHQ13_RS03345 (WHQ13_03345) ilvC 632531..633553 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHQ13_RS03350 (WHQ13_03350) - 633557..634639 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  WHQ13_RS03355 (WHQ13_03355) dprA 634629..635402 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  WHQ13_RS03360 (WHQ13_03360) dprB 635399..635782 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHQ13_RS03365 (WHQ13_03365) - 635811..636650 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ13_RS03370 (WHQ13_03370) msrA 636829..637326 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ13_RS03375 (WHQ13_03375) ppa 637368..637886 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHQ13_RS03380 (WHQ13_03380) adk 637896..638474 (-) 579 WP_002859580.1 adenylate kinase -
  WHQ13_RS03385 (WHQ13_03385) aspS 638471..640222 (-) 1752 WP_011049750.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=867361 WHQ13_RS03360 WP_002852281.1 635399..635782(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0087]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=867361 WHQ13_RS03360 WP_002852281.1 635399..635782(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0087]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449