Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EUCA2A_RS00925 Genome accession   NZ_CP132135
Coordinates   213014..214849 (-) Length   611 a.a.
NCBI ID   WP_207639413.1    Uniprot ID   -
Organism   Eubacterium callanderi strain DSM 2593     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 208014..219849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUCA2A_RS00905 (EUCA2A_01820) - 208437..209321 (+) 885 WP_090410551.1 LysR family transcriptional regulator -
  EUCA2A_RS00910 (EUCA2A_01830) - 209419..210387 (+) 969 WP_180493679.1 DMT family transporter -
  EUCA2A_RS00915 (EUCA2A_01840) ahpC 210577..211143 (+) 567 WP_013382603.1 alkyl hydroperoxide reductase subunit C -
  EUCA2A_RS00920 (EUCA2A_01850) - 211160..212827 (+) 1668 WP_320074659.1 FAD-dependent oxidoreductase -
  EUCA2A_RS00925 (EUCA2A_01860) rcrQ 213014..214849 (-) 1836 WP_207639413.1 ABC transporter ATP-binding protein Regulator
  EUCA2A_RS00930 (EUCA2A_01870) rcrP 214842..216605 (-) 1764 WP_148430189.1 ABC transporter ATP-binding protein Regulator
  EUCA2A_RS00935 (EUCA2A_01880) - 216671..216844 (-) 174 WP_013382598.1 cysteine-rich KTR domain-containing protein -
  EUCA2A_RS00940 (EUCA2A_01890) - 216837..217319 (-) 483 WP_320074660.1 MarR family winged helix-turn-helix transcriptional regulator -
  EUCA2A_RS00945 (EUCA2A_01900) - 217583..217837 (+) 255 WP_320074661.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67706.08 Da        Isoelectric Point: 9.2596

>NTDB_id=867175 EUCA2A_RS00925 WP_207639413.1 213014..214849(-) (rcrQ) [Eubacterium callanderi strain DSM 2593]
MNNAQYNKNQKAENTDLSDFSGMSGSVAKAKDTKKTIKMLLTYSKKYLPGIIIAVIAAVAGTIIALVGPGKLKVLTNLIT
EGIPTIIDMPGIVKIGILLIALYLTSALLNTLQGWIMATVTQKISQKMRIDISRKINRLPMWFYHKNTTGDILSRITNDV
DSLGQNLNNSLTTLVTSITMLTGSLIMMFITNWTMTLAAIASVVLGFITMMIIMSKSQKHFDNQQKYLGLINGHIEETYT
GHLIVKAYNGEQQMFEPFKGLNKKLNKSTYMAQFLSGLMMPIMTFVDNISYVAVIVVGASLVISGQISFGVIVAFLVYVR
YFTQPLTQIAQLAQGLQMAVASGERVFEFLDAEEMADEKNKKAPLQNVKGHVEFKNVKFSYEGTDKMVINNFSAIAKPGQ
KIAIVGPTGSGKTTLVNLLMRFNEINSGDILIDGVPIRQMTRAQVHSLFCMVLQDTWLFEGTIRENIVYNKQNVSDEDLK
KACALVGLHHFIRTLPNGYDTVLNDKVNLSAGQRQQITIARTMIDNAPMLILDEATSSIDTRTEVMIQNAMDKLMEGRTS
FVIAHRLSTIKNADIILVLKDGDIIESGSHTELIEKNGFYAELYNSQFEVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=867175 EUCA2A_RS00925 WP_207639413.1 213014..214849(-) (rcrQ) [Eubacterium callanderi strain DSM 2593]
ATGAATAATGCGCAATACAATAAAAACCAGAAGGCCGAAAACACGGACCTCTCCGATTTTTCCGGCATGAGCGGATCTGT
TGCAAAAGCAAAAGATACGAAAAAAACAATAAAAATGCTGTTGACTTATTCAAAAAAATACCTGCCGGGTATCATCATTG
CAGTTATAGCCGCTGTTGCAGGGACTATCATTGCCCTGGTAGGCCCTGGTAAACTCAAAGTTTTAACCAATCTGATTACT
GAAGGTATCCCGACCATCATCGATATGCCTGGCATTGTTAAAATTGGGATTCTTTTAATTGCATTGTACTTAACGAGTGC
GCTCTTAAATACCTTACAGGGATGGATCATGGCCACCGTCACCCAGAAGATATCTCAAAAAATGCGAATTGATATCAGTA
GAAAAATCAACCGTCTGCCCATGTGGTTTTATCATAAAAACACCACCGGCGACATTCTTTCCCGCATCACAAACGATGTC
GATTCACTGGGGCAGAATTTAAATAACAGTTTGACCACCCTTGTAACGTCCATCACCATGCTCACGGGCTCTCTCATCAT
GATGTTCATCACAAACTGGACCATGACTCTTGCGGCAATTGCCTCTGTCGTCCTTGGATTTATCACTATGATGATCATTA
TGAGTAAATCTCAAAAACATTTTGACAACCAGCAAAAATATTTGGGGCTTATTAACGGCCATATCGAAGAAACCTACACG
GGCCACCTTATTGTAAAGGCCTATAACGGCGAGCAGCAGATGTTTGAGCCCTTCAAAGGCCTAAACAAAAAACTAAACAA
AAGTACCTATATGGCCCAATTTCTTTCTGGCCTGATGATGCCTATCATGACCTTTGTAGACAACATCAGTTATGTTGCTG
TCATCGTTGTCGGTGCGTCTTTAGTGATAAGCGGACAAATCTCTTTTGGCGTGATTGTCGCGTTCTTGGTCTATGTGCGC
TATTTCACCCAGCCCCTCACACAAATCGCCCAATTGGCTCAAGGCTTACAGATGGCGGTTGCCTCTGGTGAACGTGTCTT
TGAATTCTTGGATGCAGAGGAGATGGCTGATGAAAAAAATAAAAAAGCGCCACTGCAGAATGTAAAGGGCCATGTCGAAT
TTAAAAATGTCAAATTCAGCTACGAAGGGACCGATAAAATGGTTATCAATAACTTTTCCGCCATCGCCAAACCCGGACAA
AAAATTGCCATTGTCGGTCCAACCGGATCAGGAAAAACAACCCTTGTCAATTTACTCATGCGTTTTAATGAGATCAACAG
CGGTGATATTTTAATTGACGGCGTTCCAATCCGGCAAATGACAAGAGCTCAGGTGCATTCTCTTTTCTGTATGGTCTTGC
AAGACACCTGGCTTTTTGAAGGCACCATTCGGGAAAACATTGTTTACAACAAGCAAAACGTATCCGACGAAGATCTCAAA
AAGGCCTGTGCGTTGGTGGGCTTGCACCACTTCATCCGTACTCTTCCCAATGGGTATGATACAGTCCTGAACGATAAGGT
TAATCTTTCAGCGGGCCAGCGGCAGCAGATAACCATTGCCCGCACCATGATTGATAACGCACCCATGCTCATTTTAGATG
AAGCGACAAGCTCCATTGACACCCGGACAGAAGTGATGATTCAAAATGCGATGGACAAGCTTATGGAAGGCCGCACCTCC
TTTGTCATCGCCCATCGCCTTTCCACCATCAAAAACGCAGACATCATCCTAGTGCTCAAAGACGGTGATATTATTGAAAG
CGGCAGTCATACCGAATTAATTGAAAAAAACGGTTTTTACGCCGAGCTTTACAACAGCCAGTTTGAAGTCGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(51-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.759

94.926

0.501