Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q8W18_RS19290 Genome accession   NZ_CP132058
Coordinates   3752514..3753059 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3747514..3758059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS19265 (Q8W18_19265) - 3747776..3748384 (-) 609 WP_306011515.1 alpha/beta hydrolase -
  Q8W18_RS19270 (Q8W18_19270) - 3748381..3749352 (-) 972 WP_306011516.1 ring-cleaving dioxygenase -
  Q8W18_RS19275 (Q8W18_19275) - 3749544..3751061 (-) 1518 WP_306011517.1 ABC transporter permease/substrate-binding protein -
  Q8W18_RS19280 (Q8W18_19280) - 3751054..3752019 (-) 966 WP_306011518.1 ABC transporter ATP-binding protein -
  Q8W18_RS19285 (Q8W18_19285) rpsR 3752230..3752469 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  Q8W18_RS19290 (Q8W18_19290) ssbA 3752514..3753059 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  Q8W18_RS19295 (Q8W18_19295) rpsF 3753096..3753383 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  Q8W18_RS19300 (Q8W18_19300) ychF 3753492..3754592 (-) 1101 WP_144493283.1 redox-regulated ATPase YchF -
  Q8W18_RS19305 (Q8W18_19305) - 3754809..3755015 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  Q8W18_RS19310 (Q8W18_19310) - 3755308..3756627 (+) 1320 WP_306011519.1 hydrolase -
  Q8W18_RS19315 (Q8W18_19315) - 3756643..3757053 (+) 411 WP_044139037.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=867078 Q8W18_RS19290 WP_003215157.1 3752514..3753059(-) (ssbA) [Bacillus pumilus strain F12-21]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=867078 Q8W18_RS19290 WP_003215157.1 3752514..3753059(-) (ssbA) [Bacillus pumilus strain F12-21]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376