Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   Q8W18_RS15065 Genome accession   NZ_CP132058
Coordinates   2899386..2900027 (-) Length   213 a.a.
NCBI ID   WP_169055622.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2894386..2905027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS15030 (Q8W18_15030) - 2895519..2895950 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  Q8W18_RS15035 (Q8W18_15035) - 2895950..2896291 (+) 342 WP_169055619.1 Na(+)/H(+) antiporter subunit C -
  Q8W18_RS15040 (Q8W18_15040) - 2896284..2897762 (+) 1479 WP_306011131.1 Na+/H+ antiporter subunit D -
  Q8W18_RS15045 (Q8W18_15045) - 2897769..2898248 (+) 480 WP_169055621.1 Na+/H+ antiporter subunit E -
  Q8W18_RS15050 (Q8W18_15050) - 2898248..2898529 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  Q8W18_RS15055 (Q8W18_15055) mnhG 2898513..2898887 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  Q8W18_RS15060 (Q8W18_15060) - 2898973..2899362 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  Q8W18_RS15065 (Q8W18_15065) comA 2899386..2900027 (-) 642 WP_169055622.1 response regulator transcription factor Regulator
  Q8W18_RS15070 (Q8W18_15070) comP 2900108..2902399 (-) 2292 WP_306011132.1 ATP-binding protein Regulator
  Q8W18_RS15075 (Q8W18_15075) comX 2902413..2902586 (-) 174 WP_306011133.1 competence pheromone ComX -
  Q8W18_RS15080 (Q8W18_15080) - 2902564..2903487 (-) 924 WP_323639225.1 polyprenyl synthetase family protein -
  Q8W18_RS15085 (Q8W18_15085) degQ 2903639..2903779 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  Q8W18_RS15090 (Q8W18_15090) - 2904285..2904638 (+) 354 WP_034620108.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24126.50 Da        Isoelectric Point: 4.5026

>NTDB_id=867064 Q8W18_RS15065 WP_169055622.1 2899386..2900027(-) (comA) [Bacillus pumilus strain F12-21]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIQAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=867064 Q8W18_RS15065 WP_169055622.1 2899386..2900027(-) (comA) [Bacillus pumilus strain F12-21]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAACAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCAGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATCTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCAATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714