Detailed information NTG0086659

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K5631_RS12565
• Genome accession: NZ_AP024617
• Coordinates: 2833050..2833964 (+)
• Length: 304 a.a.
• NCBI ID: WP_208170501.1
• Uniprot ID: -
• Organism: Shewanella algae strain TUM17386
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2828050..2838964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5631_RS12550 (TUM17386_24780)	-	2829424..2829837 (+)	414	WP_144224956.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
K5631_RS12555 (TUM17386_24790)	pilB	2829847..2831553 (+)	1707	WP_144224957.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K5631_RS12560 (TUM17386_24800)	pilC	2831709..2832974 (+)	1266	WP_208170502.1	type II secretion system F family protein	Machinery gene
K5631_RS12565 (TUM17386_24810)	pilD	2833050..2833964 (+)	915	WP_208170501.1	A24 family peptidase	Machinery gene
K5631_RS12570 (TUM17386_24820)	coaE	2833965..2834576 (+)	612	WP_025012056.1	dephospho-CoA kinase	-
K5631_RS12575 (TUM17386_24830)	zapD	2834573..2835313 (+)	741	WP_028779562.1	cell division protein ZapD	-
K5631_RS12580 (TUM17386_24840)	yacG	2835358..2835570 (+)	213	WP_025886789.1	DNA gyrase inhibitor YacG	-
K5631_RS12585 (TUM17386_24850)	mutT	2835570..2835968 (+)	399	WP_044733562.1	8-oxo-dGTP diphosphatase MutT	-
K5631_RS12590	-	2836046..2836319 (+)	274	Protein_2442	transposase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33953.31 Da
• Isoelectric Point: 6.4657

>NTDB_id=86659 K5631_RS12565 WP_208170501.1 2833050..2833964(+) (pilD) [Shewanella algae strain TUM17386]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVVHRLPVMMKREWQQECNQYLQEYQPEFAKQLDEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLDGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGIFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide

• Length: 915 bp

>NTDB_id=86659 K5631_RS12565 WP_208170501.1 2833050..2833964(+) (pilD) [Shewanella algae strain TUM17386]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCTGTAATAGG
CAGCTTTCTCAATGTGGTTGTCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGATGAAGCCAAGCTTAATGCACCGATAGATAACTATCCAGCCAAATAC
AATCTGATACTGCCAAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGACGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCGATATTTGAGCTACTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCAGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCGGGCATCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGTCTCTGGTCAGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTCTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.169	99.013	0.487
pilD	Acinetobacter nosocomialis M2	48.675	99.342	0.484
pilD	Vibrio cholerae strain A1552	50	96.053	0.48
pilD	Acinetobacter baumannii D1279779	48.344	99.342	0.48
pilD	Neisseria gonorrhoeae MS11	44.84	92.434	0.414