Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP83_RS05255 Genome accession   NZ_CP148154
Coordinates   1013196..1013744 (-) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0086     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1008196..1018744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP83_RS05225 (WHP83_05225) ctsT 1008246..1008548 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  WHP83_RS05230 (WHP83_05230) proC 1008545..1009276 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP83_RS05235 (WHP83_05235) fliW 1009276..1009665 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP83_RS05240 (WHP83_05240) - 1009826..1010473 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  WHP83_RS05245 (WHP83_05245) lon 1010490..1012865 (+) 2376 WP_002853487.1 endopeptidase La -
  WHP83_RS05250 (WHP83_05250) rpsR 1012925..1013185 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP83_RS05255 (WHP83_05255) ssb 1013196..1013744 (-) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  WHP83_RS05260 (WHP83_05260) rpsF 1013753..1014130 (-) 378 WP_060816225.1 30S ribosomal protein S6 -
  WHP83_RS05265 (WHP83_05265) - 1014217..1015083 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP83_RS05270 (WHP83_05270) rseP 1015076..1016182 (-) 1107 WP_060816224.1 RIP metalloprotease RseP -
  WHP83_RS05275 (WHP83_05275) pgsA 1016179..1016715 (-) 537 WP_002777068.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP83_RS05280 (WHP83_05280) rdxA 1016866..1017471 (-) 606 WP_060816223.1 NAD(P)H-dependent oxidoreductase -
  WHP83_RS05285 (WHP83_05285) - 1017471..1018091 (-) 621 Protein_1025 NAD(P)H-dependent oxidoreductase -
  WHP83_RS05290 (WHP83_05290) - 1018155..1018272 (-) 118 Protein_1026 N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=866367 WHP83_RS05255 WP_002860190.1 1013196..1013744(-) (ssb) [Campylobacter jejuni strain Z1323HCJ0086]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=866367 WHP83_RS05255 WP_002860190.1 1013196..1013744(-) (ssb) [Campylobacter jejuni strain Z1323HCJ0086]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGTGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363