Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Q7W79_RS08770 Genome accession   NZ_CP131931
Coordinates   206054..206698 (-) Length   214 a.a.
NCBI ID   WP_024701139.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 201054..211698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS08760 (Q7W79_08760) uvrA 201964..204786 (-) 2823 WP_025522377.1 excinuclease ABC subunit UvrA -
  Q7W79_RS08765 (Q7W79_08765) galU 204924..205796 (-) 873 WP_021454322.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Q7W79_RS08770 (Q7W79_08770) qstR 206054..206698 (-) 645 WP_024701139.1 LuxR C-terminal-related transcriptional regulator Regulator
  Q7W79_RS08775 (Q7W79_08775) ssb 206977..207507 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  Q7W79_RS08780 (Q7W79_08780) csrD 207748..209757 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  Q7W79_RS08785 (Q7W79_08785) - 209769..211214 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24360.17 Da        Isoelectric Point: 8.8082

>NTDB_id=866334 Q7W79_RS08770 WP_024701139.1 206054..206698(-) (qstR) [Vibrio parahaemolyticus strain RP0132]
MRKSAYARKLFLISMEDDAAQKVASLEKHIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=866334 Q7W79_RS08770 WP_024701139.1 206054..206698(-) (qstR) [Vibrio parahaemolyticus strain RP0132]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGCACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523