Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP77_RS05850 Genome accession   NZ_CP148153
Coordinates   1101722..1102270 (-) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1096722..1107270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP77_RS05820 (WHP77_05820) ctsT 1096772..1097074 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  WHP77_RS05825 (WHP77_05825) proC 1097071..1097802 (-) 732 WP_002864259.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP77_RS05830 (WHP77_05830) fliW 1097802..1098191 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP77_RS05835 (WHP77_05835) - 1098352..1098999 (+) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  WHP77_RS05840 (WHP77_05840) lon 1099016..1101391 (+) 2376 WP_002853487.1 endopeptidase La -
  WHP77_RS05845 (WHP77_05845) rpsR 1101451..1101711 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP77_RS05850 (WHP77_05850) ssb 1101722..1102270 (-) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  WHP77_RS05855 (WHP77_05855) rpsF 1102282..1102656 (-) 375 WP_002890070.1 30S ribosomal protein S6 -
  WHP77_RS05860 (WHP77_05860) - 1102743..1103609 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP77_RS05865 (WHP77_05865) rseP 1103602..1104708 (-) 1107 WP_002852927.1 RIP metalloprotease RseP -
  WHP77_RS05870 (WHP77_05870) pgsA 1104705..1105241 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP77_RS05875 (WHP77_05875) rdxA 1105366..1105971 (-) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP77_RS05880 (WHP77_05880) - 1105971..1106591 (-) 621 WP_100624967.1 NAD(P)H-dependent oxidoreductase -
  WHP77_RS05885 (WHP77_05885) - 1106655..1107080 (-) 426 WP_338844400.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=866322 WHP77_RS05850 WP_002890071.1 1101722..1102270(-) (ssb) [Campylobacter jejuni strain Z1323PCJ0002]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=866322 WHP77_RS05850 WP_002890071.1 1101722..1102270(-) (ssb) [Campylobacter jejuni strain Z1323PCJ0002]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363