Detailed information NTG0866110

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: B6N23_RS16880
• Genome accession: NZ_CP131913
• Coordinates: 3588866..3589714 (-)
• Length: 282 a.a.
• NCBI ID: WP_305503882.1
• Uniprot ID: -
• Organism: Halomonas alkalicola strain CICC 11012s
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3583866..3594714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B6N23_RS16855 (B6N23_16860)	dinB	3584436..3585482 (-)	1047	WP_305500926.1	DNA polymerase IV	-
B6N23_RS16860 (B6N23_16865)	lexA	3585503..3586153 (-)	651	WP_305500928.1	transcriptional repressor LexA	-
B6N23_RS16865 (B6N23_16870)	-	3586403..3587086 (+)	684	WP_305500930.1	TetR/AcrR family transcriptional regulator	-
B6N23_RS16870 (B6N23_16875)	nagZ	3587231..3588238 (+)	1008	WP_305500933.1	beta-N-acetylhexosaminidase	-
B6N23_RS16875 (B6N23_16880)	-	3588284..3588862 (+)	579	WP_305500937.1	hypoxanthine-guanine phosphoribosyltransferase	-
B6N23_RS16880 (B6N23_16885)	pilD	3588866..3589714 (-)	849	WP_305503882.1	A24 family peptidase	Machinery gene
B6N23_RS16885 (B6N23_16890)	pilC	3589736..3590971 (-)	1236	WP_305500941.1	type II secretion system F family protein	Machinery gene
B6N23_RS16890 (B6N23_16895)	pilB	3591024..3592814 (-)	1791	WP_305500943.1	type IV-A pilus assembly ATPase PilB	Machinery gene
B6N23_RS16895 (B6N23_16900)	-	3593035..3593445 (-)	411	WP_110070079.1	DUF86 domain-containing protein	-
B6N23_RS16900 (B6N23_16905)	-	3593435..3593860 (-)	426	WP_305500946.1	nucleotidyltransferase domain-containing protein	-
B6N23_RS16905 (B6N23_16910)	-	3593982..3594125 (-)	144	WP_305500948.1	hypothetical protein	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 30446.63 Da
• Isoelectric Point: 6.8606

>NTDB_id=866110 B6N23_RS16880 WP_305503882.1 3588866..3589714(-) (pilD) [Halomonas alkalicola strain CICC 11012s]
MDLPPSLLWPLAAFVGLCLGSFLNVVIVRLPVMLMLGWRAEAREALELPSETQPEFNLATPRSMCPSCETPIAWHDNLPV
VGWLKRRGRCANCDAAISPQYPLVELAGGALALAVVALFGPSWQGLFVLGACLALLAMAVIDLRTQLLPDLLTLPLLWAG
LAYQLLFQPLLLSSAVIGAMAGYLVLWSFYWAFKLITGKEGMGYGDFKLLAALGAWMGWQYLPLLLILSAGIGAIIGILV
QLAVPRLRAAPMPFGPYLALAGWVALLAGEPLMAAYGRFFLL

Nucleotide

• Length: 849 bp

>NTDB_id=866110 B6N23_RS16880 WP_305503882.1 3588866..3589714(-) (pilD) [Halomonas alkalicola strain CICC 11012s]
CTGGATCTTCCCCCTTCCCTGCTCTGGCCGCTGGCGGCCTTCGTCGGCCTGTGCCTGGGCAGCTTCCTCAACGTGGTGAT
CGTGCGCCTGCCGGTGATGCTGATGCTGGGCTGGCGGGCCGAGGCCCGCGAGGCGCTGGAGCTGCCGAGTGAGACGCAGC
CGGAATTCAACCTGGCCACGCCGCGCTCGATGTGCCCGAGCTGCGAGACCCCCATCGCCTGGCACGACAACCTCCCGGTG
GTGGGCTGGCTAAAGCGCCGCGGACGCTGCGCGAACTGCGATGCGGCCATCAGCCCCCAGTATCCGCTGGTGGAGCTGGC
CGGCGGGGCGCTCGCGCTTGCGGTAGTGGCGCTGTTCGGGCCGAGCTGGCAGGGGCTCTTCGTGCTGGGGGCGTGCCTTG
CACTGCTGGCCATGGCGGTGATCGACCTGCGCACCCAGCTGCTGCCGGACCTGCTCACCCTGCCGCTGCTGTGGGCGGGG
CTCGCCTACCAGCTGCTGTTCCAGCCGCTGCTGCTTTCGAGCGCGGTGATCGGCGCCATGGCGGGGTATCTCGTGCTGTG
GAGCTTCTACTGGGCGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTGCTCGCGGCGCTGG
GCGCCTGGATGGGCTGGCAATATCTGCCGCTGCTGCTGATCCTCTCCGCGGGGATCGGCGCCATCATCGGCATCCTGGTG
CAGCTGGCGGTGCCGCGGCTGCGCGCCGCCCCCATGCCCTTCGGGCCCTATCTGGCCCTGGCGGGCTGGGTGGCGCTGCT
GGCCGGGGAGCCGCTGATGGCGGCCTATGGAAGGTTCTTCCTGCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-238)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.673	95.39	0.493
pilD	Vibrio campbellii strain DS40M4	49.462	98.936	0.489
pilD	Acinetobacter baumannii D1279779	49.064	94.681	0.465
pilD	Acinetobacter nosocomialis M2	48.689	94.681	0.461
pilD	Neisseria gonorrhoeae MS11	46.269	95.035	0.44