Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B6N23_RS16885 Genome accession   NZ_CP131913
Coordinates   3589736..3590971 (-) Length   411 a.a.
NCBI ID   WP_305500941.1    Uniprot ID   -
Organism   Halomonas alkalicola strain CICC 11012s     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3584736..3595971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6N23_RS16860 (B6N23_16865) lexA 3585503..3586153 (-) 651 WP_305500928.1 transcriptional repressor LexA -
  B6N23_RS16865 (B6N23_16870) - 3586403..3587086 (+) 684 WP_305500930.1 TetR/AcrR family transcriptional regulator -
  B6N23_RS16870 (B6N23_16875) nagZ 3587231..3588238 (+) 1008 WP_305500933.1 beta-N-acetylhexosaminidase -
  B6N23_RS16875 (B6N23_16880) - 3588284..3588862 (+) 579 WP_305500937.1 hypoxanthine-guanine phosphoribosyltransferase -
  B6N23_RS16880 (B6N23_16885) pilD 3588866..3589714 (-) 849 WP_305503882.1 A24 family peptidase Machinery gene
  B6N23_RS16885 (B6N23_16890) pilC 3589736..3590971 (-) 1236 WP_305500941.1 type II secretion system F family protein Machinery gene
  B6N23_RS16890 (B6N23_16895) pilB 3591024..3592814 (-) 1791 WP_305500943.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B6N23_RS16895 (B6N23_16900) - 3593035..3593445 (-) 411 WP_110070079.1 DUF86 domain-containing protein -
  B6N23_RS16900 (B6N23_16905) - 3593435..3593860 (-) 426 WP_305500946.1 nucleotidyltransferase domain-containing protein -
  B6N23_RS16905 (B6N23_16910) - 3593982..3594125 (-) 144 WP_305500948.1 hypothetical protein -
  B6N23_RS16910 (B6N23_16915) - 3594382..3595824 (+) 1443 WP_305500950.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44962.92 Da        Isoelectric Point: 10.1521

>NTDB_id=866111 B6N23_RS16885 WP_305500941.1 3589736..3590971(-) (pilC) [Halomonas alkalicola strain CICC 11012s]
MATARKLRPTKEIKLYRWRWTGKGPGGRKVGGEIVAAQKGEVEKILAGQNIIIKNVRRKSGFGGGMGKIKPRDIMLFARQ
MATMIRAGVPVLQAFQVVAESIKKPAMSGLVQELMNDVAAGASFSDALKRHPQHFDRLFANLVEAGEQSGSLDRMLDRVA
TYKEKIELLKGRVKKALWYPAAVIAVGIGVTALLLIKVVPQFESLFQGFGAELPAMTRMTIAMSEFAQAYWWWGVLGVAA
LIFFIRTGMKKSEAFAYRMHAFALKVPVLGEILDKSAVARYSRTLATTFGAGVPLVEALDTAAGATGNKVYERAVVQIRE
DVATGQQLNFAMRMTERFPPLAVQMVGIGEEAGSLDAMLNRVADYYEEEVDNMVDTLTSLLEPFIIVVLGVLVGGLVISM
YLPIFELGSVI

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=866111 B6N23_RS16885 WP_305500941.1 3589736..3590971(-) (pilC) [Halomonas alkalicola strain CICC 11012s]
ATGGCCACAGCACGGAAATTGCGCCCCACCAAGGAGATCAAGCTCTACCGCTGGCGCTGGACAGGCAAGGGCCCCGGCGG
GCGCAAGGTGGGGGGTGAGATCGTCGCCGCCCAGAAGGGCGAGGTGGAGAAGATCCTCGCCGGCCAGAACATCATCATCA
AGAACGTGCGGCGGAAAAGTGGCTTCGGCGGCGGCATGGGCAAGATCAAGCCCCGCGACATCATGCTCTTCGCACGCCAG
ATGGCCACCATGATCCGTGCTGGGGTGCCGGTGCTGCAGGCCTTCCAGGTGGTGGCGGAAAGCATCAAGAAGCCGGCCAT
GAGCGGCCTGGTGCAGGAGCTGATGAACGACGTGGCCGCCGGCGCCTCGTTTTCCGATGCGCTGAAGCGTCACCCCCAGC
ACTTCGATCGACTGTTTGCCAACCTGGTGGAAGCCGGCGAGCAGTCGGGCTCGCTGGACCGAATGCTCGACCGCGTGGCC
ACCTATAAGGAGAAGATCGAGCTGCTCAAGGGGCGCGTGAAGAAGGCGCTCTGGTACCCAGCGGCGGTGATCGCAGTGGG
CATCGGGGTCACCGCCCTGCTGCTGATCAAGGTGGTGCCACAGTTCGAGAGCCTATTCCAGGGCTTCGGCGCGGAGCTGC
CGGCCATGACCCGCATGACCATTGCCATGTCCGAGTTCGCCCAGGCCTACTGGTGGTGGGGGGTGCTGGGGGTGGCCGCC
CTGATCTTCTTCATCCGCACCGGCATGAAGAAGTCCGAGGCCTTCGCCTACCGCATGCACGCCTTTGCCTTGAAGGTGCC
GGTACTGGGGGAGATCCTCGATAAATCCGCGGTAGCGCGCTACTCGCGAACCCTGGCCACCACCTTCGGCGCCGGCGTGC
CCCTGGTGGAGGCGCTGGACACCGCCGCCGGCGCCACCGGCAACAAGGTCTACGAGCGCGCGGTGGTGCAGATCCGCGAA
GACGTGGCCACCGGCCAGCAGCTCAACTTTGCCATGCGCATGACCGAGCGCTTCCCGCCGCTGGCGGTGCAGATGGTCGG
CATCGGCGAGGAGGCGGGCTCGCTGGACGCCATGCTCAACCGGGTGGCGGACTACTACGAGGAGGAGGTCGACAACATGG
TCGATACCCTCACCTCGCTGCTGGAGCCCTTCATTATCGTGGTGCTGGGCGTGCTGGTGGGCGGGCTCGTTATCTCCATG
TACCTGCCGATCTTCGAGCTGGGCAGCGTGATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(282-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.342

98.054

0.533
  pilC Acinetobacter baylyi ADP1

52.897

96.594

0.511
  pilC Acinetobacter baumannii D1279779

52.393

96.594

0.506
  pilC Legionella pneumophila strain ERS1305867

51.87

97.567

0.506
  pilC Vibrio cholerae strain A1552

43.243

99.027

0.428
  pilC Vibrio campbellii strain DS40M4

43.5

97.324

0.423
  pilG Neisseria meningitidis 44/76-A

42.424

96.35

0.409
  pilG Neisseria gonorrhoeae MS11

42.424

96.35

0.409