Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Q7573_RS01955 Genome accession   NZ_CP131873
Coordinates   417630..418439 (+) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain 2014S07-126     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412630..423439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7573_RS01920 (Q7573_01925) - 413188..413343 (-) 156 Protein_370 hypothetical protein -
  Q7573_RS01925 (Q7573_01930) rpoZ 413382..413660 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  Q7573_RS01930 (Q7573_01935) gmk 413733..414362 (-) 630 WP_002116973.1 guanylate kinase -
  Q7573_RS01935 (Q7573_01940) ispH 414485..415435 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7573_RS01940 (Q7573_01945) fimU 415605..416078 (+) 474 WP_002116879.1 GspH/FimT family pseudopilin Machinery gene
  Q7573_RS01945 (Q7573_01950) pilV 416072..416632 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  Q7573_RS01950 (Q7573_01955) pilW 416632..417633 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  Q7573_RS01955 (Q7573_01960) pilX 417630..418439 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q7573_RS01960 (Q7573_01965) pilY1 418451..422305 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  Q7573_RS01965 (Q7573_01970) pilY2 422316..422798 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  Q7573_RS01970 (Q7573_01975) pilE 422795..423220 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=865665 Q7573_RS01955 WP_002117088.1 417630..418439(+) (pilX) [Acinetobacter pittii strain 2014S07-126]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=865665 Q7573_RS01955 WP_002117088.1 417630..418439(+) (pilX) [Acinetobacter pittii strain 2014S07-126]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914