Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7573_RS01970 Genome accession   NZ_CP131873
Coordinates   422795..423220 (+) Length   141 a.a.
NCBI ID   WP_002117055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2014S07-126     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417795..428220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7573_RS01960 (Q7573_01965) pilY1 418451..422305 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  Q7573_RS01965 (Q7573_01970) pilY2 422316..422798 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  Q7573_RS01970 (Q7573_01975) pilE 422795..423220 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  Q7573_RS01975 (Q7573_01980) rpsP 423368..423619 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  Q7573_RS01980 (Q7573_01985) rimM 423639..424187 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  Q7573_RS01985 (Q7573_01990) trmD 424230..424985 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q7573_RS01990 (Q7573_01995) rplS 425205..425573 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  Q7573_RS01995 (Q7573_02000) lip 425624..426565 (-) 942 WP_002116859.1 triacylglycerol lipase -
  Q7573_RS02000 (Q7573_02005) - 426681..427712 (-) 1032 WP_002116720.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15172.33 Da        Isoelectric Point: 7.1292

>NTDB_id=865668 Q7573_RS01970 WP_002117055.1 422795..423220(+) (pilE) [Acinetobacter pittii strain 2014S07-126]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKIVHNRYPSNATITSVYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=865668 Q7573_RS01970 WP_002117055.1 422795..423220(+) (pilE) [Acinetobacter pittii strain 2014S07-126]
ATGAAGAATGGTTTTACTTTAATAGAACTCATGATTGTAGTCGCAATAATTGCAATTTTAGCGGCTATAGCTACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAATAGTTCACAATCGCTATCCATCGAATGCAACGATTACATCGGTTTATGGTTCTAGTGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTCGCTAGCATAACTGATTCAAGTTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518