Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   Q7573_RS01940 Genome accession   NZ_CP131873
Coordinates   415605..416078 (+) Length   157 a.a.
NCBI ID   WP_002116879.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2014S07-126     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410605..421078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7573_RS01915 (Q7573_01920) spoT 411067..413172 (-) 2106 WP_002116807.1 HD domain-containing protein -
  Q7573_RS01920 (Q7573_01925) - 413188..413343 (-) 156 Protein_370 hypothetical protein -
  Q7573_RS01925 (Q7573_01930) rpoZ 413382..413660 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  Q7573_RS01930 (Q7573_01935) gmk 413733..414362 (-) 630 WP_002116973.1 guanylate kinase -
  Q7573_RS01935 (Q7573_01940) ispH 414485..415435 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7573_RS01940 (Q7573_01945) fimU 415605..416078 (+) 474 WP_002116879.1 GspH/FimT family pseudopilin Machinery gene
  Q7573_RS01945 (Q7573_01950) pilV 416072..416632 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  Q7573_RS01950 (Q7573_01955) pilW 416632..417633 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  Q7573_RS01955 (Q7573_01960) pilX 417630..418439 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16923.62 Da        Isoelectric Point: 7.7942

>NTDB_id=865662 Q7573_RS01940 WP_002116879.1 415605..416078(+) (fimU) [Acinetobacter pittii strain 2014S07-126]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSALTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=865662 Q7573_RS01940 WP_002116879.1 415605..416078(+) (fimU) [Acinetobacter pittii strain 2014S07-126]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTGCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.261

100

0.873