Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q7574_RS17160 Genome accession   NZ_CP131867
Coordinates   3598065..3599477 (+) Length   470 a.a.
NCBI ID   WP_342063410.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3593065..3604477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS17140 (Q7574_17210) thrC 3593319..3594458 (+) 1140 WP_000063593.1 threonine synthase -
  Q7574_RS17145 (Q7574_17215) pbpG 3594567..3595613 (-) 1047 WP_151283498.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Q7574_RS17150 (Q7574_17220) gacA 3595826..3596461 (+) 636 WP_002121174.1 response regulator -
  Q7574_RS17155 (Q7574_17225) pilS 3596472..3598040 (+) 1569 WP_342063409.1 PAS domain-containing sensor histidine kinase Regulator
  Q7574_RS17160 (Q7574_17230) pilR 3598065..3599477 (+) 1413 WP_342063410.1 sigma-54 dependent transcriptional regulator Regulator
  Q7574_RS17165 (Q7574_17235) ctpA 3599481..3600665 (-) 1185 WP_199978402.1 S41 family peptidase -
  Q7574_RS17170 (Q7574_17240) gpmI 3600681..3602228 (-) 1548 WP_342063411.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Q7574_RS17175 (Q7574_17245) lptG 3602355..3603425 (-) 1071 WP_161283110.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52670.76 Da        Isoelectric Point: 6.4509

>NTDB_id=865649 Q7574_RS17160 WP_342063410.1 3598065..3599477(+) (pilR) [Acinetobacter pittii strain 2012N08-034]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLKHLAPPVRCNSVSPQIATKQVN
QTLTAQTHPKFPIEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=865649 Q7574_RS17160 WP_342063410.1 3598065..3599477(+) (pilR) [Acinetobacter pittii strain 2012N08-034]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGCTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAAGCGCTTAACCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTGCGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCCGTATTTGTTACAGGTGAGTCTGGTACGGGCAAAGAAGTTGTTGCGAATCTTATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCGACTGAACTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGAGCGACTCAAGACAAACAAGGTCTGATTTTATCAGCTCATGGAGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTCGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAACAATTAACAGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGATTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AATGTATTGATTTGAAACACTTGGCACCTCCTGTTAGATGCAATAGTGTTAGTCCGCAAATCGCAACTAAACAGGTAAAT
CAAACGCTAACTGCTCAAACTCATCCAAAATTTCCAATAGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGACAT
TTTACTAAATGCACTAAACATGACGCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTTCGTTCTTTGC
GCTATCGACTTAAAAAATTTGGTTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.198

97.66

0.5