Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   Q7574_RS17155 Genome accession   NZ_CP131867
Coordinates   3596472..3598040 (+) Length   522 a.a.
NCBI ID   WP_342063409.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3591472..3603040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS17135 (Q7574_17205) hom 3591963..3593264 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  Q7574_RS17140 (Q7574_17210) thrC 3593319..3594458 (+) 1140 WP_000063593.1 threonine synthase -
  Q7574_RS17145 (Q7574_17215) pbpG 3594567..3595613 (-) 1047 WP_151283498.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Q7574_RS17150 (Q7574_17220) gacA 3595826..3596461 (+) 636 WP_002121174.1 response regulator -
  Q7574_RS17155 (Q7574_17225) pilS 3596472..3598040 (+) 1569 WP_342063409.1 PAS domain-containing sensor histidine kinase Regulator
  Q7574_RS17160 (Q7574_17230) pilR 3598065..3599477 (+) 1413 WP_342063410.1 sigma-54 dependent transcriptional regulator Regulator
  Q7574_RS17165 (Q7574_17235) ctpA 3599481..3600665 (-) 1185 WP_199978402.1 S41 family peptidase -
  Q7574_RS17170 (Q7574_17240) gpmI 3600681..3602228 (-) 1548 WP_342063411.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59082.62 Da        Isoelectric Point: 6.2316

>NTDB_id=865648 Q7574_RS17155 WP_342063409.1 3596472..3598040(+) (pilS) [Acinetobacter pittii strain 2012N08-034]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGEIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDVEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTHPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=865648 Q7574_RS17155 WP_342063409.1 3596472..3598040(+) (pilS) [Acinetobacter pittii strain 2012N08-034]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTGCAACAACCCACTCTATATTCTT
ACACACTGCTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCTACTCAGGCAACAAGGCAG
CTTATTTTATTTTTTGTAGTTGATATTATTTGTTTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGTGCCTTA
TTGGCATTCTTGTTTTTTGTAGTACATGGAATCGGAGAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAAGGCTATTTAGTCC
TAGATGAAAACTATGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAATCTCGGCTTTCAGCCTACTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAGCAAGCATTAACACTAC
TCATCTTACAAGATGCACAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGATGTGGAGCAGCA
AAATACTTTACGCAATATGATTGGAAAGCAAACCAAACGTATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGCATCCCATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAACTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGTTAATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGATTCGCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.636

100

0.946