Detailed information NTG0865645

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q7574_RS16695
• Genome accession: NZ_CP131867
• Coordinates: 3505548..3506408 (+)
• Length: 286 a.a.
• NCBI ID: WP_108009301.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain 2012N08-034
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3500548..3511408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7574_RS16675 (Q7574_16735)	secG	3501155..3501484 (-)	330	WP_016142373.1	preprotein translocase subunit SecG	-
Q7574_RS16680 (Q7574_16740)	tpiA	3501497..3502291 (-)	795	WP_069141694.1	triose-phosphate isomerase	-
Q7574_RS16685 (Q7574_16745)	pilB	3502583..3504295 (+)	1713	WP_126645060.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q7574_RS16690 (Q7574_16750)	pilC	3504322..3505548 (+)	1227	WP_151283487.1	type II secretion system F family protein	Machinery gene
Q7574_RS16695 (Q7574_16755)	pilD	3505548..3506408 (+)	861	WP_108009301.1	A24 family peptidase	Machinery gene
Q7574_RS16700 (Q7574_16760)	coaE	3506410..3507006 (+)	597	WP_017402593.1	dephospho-CoA kinase	-
Q7574_RS16705 (Q7574_16765)	-	3507003..3507917 (-)	915	WP_151283488.1	DMT family transporter	-
Q7574_RS16710 (Q7574_16770)	rlmB	3507953..3508702 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
Q7574_RS16715 (Q7574_16775)	-	3508805..3509131 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
Q7574_RS16720 (Q7574_16780)	-	3509208..3510518 (-)	1311	Protein_3265	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32241.71 Da
• Isoelectric Point: 6.6680

>NTDB_id=865645 Q7574_RS16695 WP_108009301.1 3505548..3506408(+) (pilD) [Acinetobacter pittii strain 2012N08-034]
MQEIIDYFIQNLTALYIVVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=865645 Q7574_RS16695 WP_108009301.1 3505548..3506408(+) (pilD) [Acinetobacter pittii strain 2012N08-034]
ATGCAAGAAATTATTGATTATTTTATTCAAAACTTAACTGCACTTTATATTGTAGTTGCATTATTGAGCCTATGCATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCGAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTCA
ACCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATTCGTTGGTATCAAAATATTCCAGTTATAAGTTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTCGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGTCTAGTGCTCACTTGGGTTCTGATTGCTTTGACATTTATAGACTTTGATACTCAGCTGCTACCCGACCGT
TTTACCCTACCTTTAGCTGCGCTTGGTTTGGGCATTAACACCTTTAATATTTACACCTCGCCTAATTCAGCCATTTGGGG
TTACCTGATTGGCTTTTTATGTCTATGGATTGTGTATTACTTATTTAAAGTCATTACAGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCTTGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	53.285	95.804	0.51
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434