Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q7611_RS03270 Genome accession   NZ_CP131723
Coordinates   646405..647202 (+) Length   265 a.a.
NCBI ID   WP_011272050.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C08-260     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 641405..652202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7611_RS03250 (Q7611_03250) recR 641559..642161 (-) 603 WP_005626527.1 recombination mediator RecR -
  Q7611_RS03255 (Q7611_03255) - 642292..642621 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7611_RS03260 (Q7611_03260) - 642790..643635 (-) 846 WP_342122161.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7611_RS03265 (Q7611_03265) - 643712..646306 (-) 2595 WP_342122163.1 penicillin-binding protein 1A -
  Q7611_RS03270 (Q7611_03270) comA 646405..647202 (+) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  Q7611_RS03275 (Q7611_03275) comB 647203..647709 (+) 507 WP_105873321.1 competence protein B Machinery gene
  Q7611_RS03280 (Q7611_03280) comC 647706..648227 (+) 522 WP_342122166.1 competence protein ComC Machinery gene
  Q7611_RS03285 (Q7611_03285) comD 648224..648637 (+) 414 WP_005649303.1 pilus assembly protein PilP Machinery gene
  Q7611_RS03290 (Q7611_03290) comE 648647..649984 (+) 1338 WP_005649302.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7611_RS03295 (Q7611_03295) - 649997..650683 (+) 687 WP_005649301.1 ComF family protein -
  Q7611_RS03300 (Q7611_03300) nfuA 650759..651355 (+) 597 WP_116939827.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31392.66 Da        Isoelectric Point: 6.2334

>NTDB_id=864789 Q7611_RS03270 WP_011272050.1 646405..647202(+) (comA) [Haemophilus influenzae strain 2018C08-260]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPISLNELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=864789 Q7611_RS03270 WP_011272050.1 646405..647202(+) (comA) [Haemophilus influenzae strain 2018C08-260]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AAATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
CTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

100

100

1
  comA Haemophilus influenzae Rd KW20

96.226

100

0.962