Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   Q7611_RS03275 Genome accession   NZ_CP131723
Coordinates   647203..647709 (+) Length   168 a.a.
NCBI ID   WP_105873321.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C08-260     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 642203..652709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7611_RS03255 (Q7611_03255) - 642292..642621 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7611_RS03260 (Q7611_03260) - 642790..643635 (-) 846 WP_342122161.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7611_RS03265 (Q7611_03265) - 643712..646306 (-) 2595 WP_342122163.1 penicillin-binding protein 1A -
  Q7611_RS03270 (Q7611_03270) comA 646405..647202 (+) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  Q7611_RS03275 (Q7611_03275) comB 647203..647709 (+) 507 WP_105873321.1 competence protein B Machinery gene
  Q7611_RS03280 (Q7611_03280) comC 647706..648227 (+) 522 WP_342122166.1 competence protein ComC Machinery gene
  Q7611_RS03285 (Q7611_03285) comD 648224..648637 (+) 414 WP_005649303.1 pilus assembly protein PilP Machinery gene
  Q7611_RS03290 (Q7611_03290) comE 648647..649984 (+) 1338 WP_005649302.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7611_RS03295 (Q7611_03295) - 649997..650683 (+) 687 WP_005649301.1 ComF family protein -
  Q7611_RS03300 (Q7611_03300) nfuA 650759..651355 (+) 597 WP_116939827.1 Fe-S biogenesis protein NfuA -
  Q7611_RS03305 (Q7611_03305) nudC 651422..652216 (+) 795 WP_136429425.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19833.75 Da        Isoelectric Point: 8.5622

>NTDB_id=864790 Q7611_RS03275 WP_105873321.1 647203..647709(+) (comB) [Haemophilus influenzae strain 2018C08-260]
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEKLNQQLHKTTKQIEQLRSTVQVG
EILTSIPKEQVKKSLQLLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=864790 Q7611_RS03275 WP_105873321.1 647203..647709(+) (comB) [Haemophilus influenzae strain 2018C08-260]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACTTTGGCTTTTAGTAATTTAATTGAACAACAAAAACAAGATCTGCAAGCACAGCAAA
CATCTTTTGAAAAACTTAATCAGCAACTTCATAAAACAACCAAGCAAATTGAACAGTTGCGTAGTACAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGAGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

91.071

100

0.911
  comB Haemophilus influenzae Rd KW20

89.881

100

0.899