Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   Q7612_RS10185 Genome accession   NZ_CP131722
Coordinates   2028389..2028736 (-) Length   115 a.a.
NCBI ID   WP_048955074.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C09-260     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2023389..2033736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7612_RS10160 (Q7612_10140) otnI 2023856..2024632 (-) 777 WP_126513689.1 2-oxo-tetronate isomerase -
  Q7612_RS10165 (Q7612_10145) otnC 2024635..2025267 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  Q7612_RS10170 (Q7612_10150) otnK 2025264..2026505 (-) 1242 WP_342122928.1 3-oxo-tetronate kinase -
  Q7612_RS10175 (Q7612_10155) ltnD 2026508..2027413 (-) 906 WP_015702001.1 L-threonate dehydrogenase -
  Q7612_RS10180 (Q7612_10160) - 2027584..2028342 (+) 759 WP_005665975.1 DeoR/GlpR family DNA-binding transcription regulator -
  Q7612_RS10185 (Q7612_10165) comE1/comEA 2028389..2028736 (-) 348 WP_048955074.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7612_RS10190 (Q7612_10170) ispH 2028905..2029849 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7612_RS10195 (Q7612_10175) lspA 2029846..2030361 (-) 516 WP_014550968.1 signal peptidase II -
  Q7612_RS10200 (Q7612_10180) - 2030431..2031990 (-) 1560 WP_342120176.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12335.18 Da        Isoelectric Point: 8.0085

>NTDB_id=864772 Q7612_RS10185 WP_048955074.1 2028389..2028736(-) (comE1/comEA) [Haemophilus influenzae strain 2018C09-260]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=864772 Q7612_RS10185 WP_048955074.1 2028389..2028736(-) (comE1/comEA) [Haemophilus influenzae strain 2018C09-260]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383