Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   Q7612_RS00285 Genome accession   NZ_CP131722
Coordinates   57675..58391 (-) Length   238 a.a.
NCBI ID   WP_005648032.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C09-260     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52675..63391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7612_RS00265 (Q7612_00265) nrdR 52767..53216 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  Q7612_RS00270 (Q7612_00270) recC 53271..56651 (-) 3381 WP_221253150.1 exodeoxyribonuclease V subunit gamma -
  Q7612_RS00275 (Q7612_00275) comQ 56697..56984 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  Q7612_RS00280 (Q7612_00280) comP 56977..57660 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  Q7612_RS00285 (Q7612_00285) comO 57675..58391 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  Q7612_RS00290 (Q7612_00290) comN 58391..58903 (-) 513 WP_005648034.1 type II secretion system protein Machinery gene
  Q7612_RS00295 (Q7612_00295) suhB 59103..59906 (+) 804 WP_032824502.1 inositol-1-monophosphatase -
  Q7612_RS00300 (Q7612_00300) nrfE 60015..61922 (+) 1908 WP_005666026.1 heme lyase NrfEFG subunit NrfE -
  Q7612_RS00305 (Q7612_00305) - 61922..62452 (+) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26771.17 Da        Isoelectric Point: 9.5508

>NTDB_id=864739 Q7612_RS00285 WP_005648032.1 57675..58391(-) (comO) [Haemophilus influenzae strain 2018C09-260]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEIIRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=864739 Q7612_RS00285 WP_005648032.1 57675..58391(-) (comO) [Haemophilus influenzae strain 2018C09-260]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGCTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCATTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992